Run and Time stopping prematurely

I am trying to run a time break down on my code to see where it's taking the longest so I can speed it up. The problem is, MATLAB's Run and Time option isn't working properly. When I run the code, it says it only takes one second. However, I know for a fact that it takes more than a few minutes. Based on the output of the profiler, it's not timing the entirety of the code. I've attached a screen shot of what the output from the profiler looks like. As you can see, it simply stops running at line 29.

[Walter Roberson]

The image did not get attached.