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This toolbox is a collection of Matlab tools that I used, adapted or developed during my PhD and post-doc work with the Besicos group at University of Zaragoza, Spain and at the National Technological University of Buenos Aires, Argentina. The ecg-kit has tools for reading, processing and presenting results. The main feature of the this toolbox is the possibility to use several popular algorithms for ECG processing, such as:
- Algorithms from Physionet's WFDB software package
- QRS detectors, such as gqrs, wqrs, wavedet, ecgpuwave, Pan & Tompkins, EP limited
- Wavedet ECG delineator
- Pulse wave detectors as wabp and wavePPG
- a2hbc and EP limited heartbeat classifiers.
And other scritps for inspecting, correcting and reporting all these results.
Cite As
marianux (2024). ecg-kit (https://github.com/marianux/ecg-kit), GitHub. Retrieved .
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common
- ADC2realunits.m
- ADC2units
- addpath_if_not_added
- adjust_string
- aip_detector
- aip_detector_concatenate
- alineate_positions
- AnnotationFilterConvert
- Annotation_process
- arb_modmax
- arrow
- AUC_calc
- autovec_calculation
- autovec_calculation_robust
- bandpass_filter_design
- BaselineWanderRemovalMedian
- BaselineWanderRemovalSplines
- best_m_lead
- bxb
- CalcRRserieQuality
- CalcRRserieRatio
- CalculatePerformanceECGtaskQRSdet
- calculateSeriesQuality
- calc_btime
- calc_correlation_gain
- calc_co_ocurrences
- cluster_data_with_EM_clust
- colvec
- combine_anns
- ConcatenateQRSdetectionPayloads
- concat_QRS_detections
- Contents.m
- cprintf
- default_concatenate_function
- default_finish_function
- default_start_function
- DelayedCovMat
- deNaN_dataset
- design_downsample_filter
- DisplayConfusionMatrix.m
- DisplayResults
- disp_option_enumeration
- disp_string_framed
- disp_string_title
- disp_xml_nodes
- ds2nfu
- ECGformat
- ecgkit_wave_defs.m
- ECGtask
- ECGtask
- ECGtask_arbitrary_function
- ECGtask_Delineation_corrector
- ECGtask_do_nothing
- ECGtask_ECG_delineation
- ECGtask_ECG_delineation_corrector
- ECGtask_heartbeat_classifier
- ECGtask_PCA_proj_basis
- ECGtask_PPG_ABP_corrector
- ECGtask_PPG_ABP_detector
- ECGtask_QRS_corrector
- ECGtask_QRS_detection
- ECGtask_QRS_detections_post_process
- ECGwrapper
- example_worst_ever_ECG_delineator
- example_worst_ever_QRS_detector
- exist_distributed_file
- getAnnNames
- GetBestQRSdetections
- GetFunctionInvocation.m
- get_ECG_idx_from_header
- get_PPG_ABP_idx_from_header
- get_QRS_from_payload
- get_segments_from_sequence
- get_time_from_xml_tag
- groupnlineup_waves
- GTHTMLtable
- HasAdminPrivs
- init_ghostscript
- init_WFDB_library
- isAHAformat
- isHESformat
- isHL7aformat
- isISHNEformat
- islater
- isMatlab
- isOctave
- list_all_ECGtask
- list_recordings
- logit_function
- matformat_definitions.m
- matrix2positions
- maximize
- max_index
- MedianFilt
- MedianFiltSequence
- merge_QRS_detections
- min_index
- mixartif
- modmax
- myzerocros
- my_colormap
- nanmeda
- pack_signal
- parse_pids
- PeakDetection2
- PiCA
- PlotGlobalWaveMarks
- PlotWaveMarks
- plot_auc
- plot_ecg_heartbeat.m
- plot_ecg_mosaic
- plot_ecg_strip
- plot_roc
- positions2matrix
- ppval
- PrctileFilt
- progress_bar
- progress_bar_ex.m
- QRScorrector
- qs_filter_design
- qs_wt.m
- rand_linespec
- readheader
- read_310_format
- read_311_format
- read_AHA_ann
- read_AHA_format
- read_AHA_header
- read_ECG
- read_HES_ann
- read_HES_format
- read_HES_header
- read_hl7a_format
- read_ishne
- read_ishne_ann
- read_ishne_format
- read_ishne_header
- read_Mortara
- read_Mortara_format
- read_Mortara_header
- reportECG
- resample_sequences
- rotateticklabel
- rowvec
- RR_calculation
- Seconds2HMS
- set_a_linespec
- set_rand_linespec
- similarity_calculation
- soft_range_conversion
- soft_set_difference
- soft_set_intersect
- soft_set_intersect
- soft_set_union
- sys_cmd_separation_string
- sys_command_strings
- tablas_y_constantes.m
- TaskPartition
- text_arrow
- text_line
- timeseries_explorer
- trim_ECG_header
- unique_w_tolerance
- wavedetMix
- WFDB_command_prefix
- woody_method
- writeannot.m
- writeheader
- xml_tag_value
common/LIBRA
- adjustedboxplot
- adjustedoutlyingness
- adm
- agnes
- bagplot
- cda
- cdq
- chiqqplot
- clara
- classSVD
- clusplot
- cpca
- cpcr
- csimca
- csimpls
- cvMcd
- cvRobpca
- cvRpcr
- cvRsimpls
- daisy
- daplot
- ddplot
- diana
- distplot
- ellipsplot
- extractmcdregres
- fanny
- greatsort
- halfspacedepth
- hl
- kernelEVD
- L1median
- libra_mahalanobis
- libra_ols
- lmc
- lsscatter
- ltsregres
- madc
- makeplot
- mc
- mcdcov
- mcdregres
- mcenter
- mlochuber
- mloclogist
- mlr
- mona
- mscalelogist
- normqqplot
- pam
- plotnumbers
- predict
- putlabel
- qn
- qnm
- randomset
- rapca
- rda
- regresdiagplot
- regresdiagplot3d
- removal
- removeObsMcd
- removeObsRobpca
- residualplot
- rmc
- robpca
- robpcaregres
- robstd
- rpcr
- rrmse
- rsimca
- rsimpls
- rsquared
- rstep
- scorediagplot
- screeplot
- simcaplot
- tree
- twopoints
- unimcd
- uniran
- updatecov
- weightmecov
common/a2hbc
common/a2hbc/scripts
- a2hbc_header.m
- a2hbc_main
- cluster_data_em
- CollectResutls
- DisableControPanel.m
- DisplayConfiguration.m
- DoHouseKeeping
- ECGtask_classification_features_calc
- EnableControPanel.m
- ExpertUserInterface
- FindClusterExamples.m
- ParseUserControlPanelInput.m
- position_waitbar.m
- ResultsForAllDatabases
- UserControlPanel.m
- UserInteraction.m
common/a2hbc/scripts/@featureMatrices
common/export_fig
- append_pdfs
- copyfig.m
- crop_borders
- eps2pdf.m
- export_fig.m
- fix_lines.m
- ghostscript.m
- im2gif
- isolate_axes.m
- pdf2eps.m
- pdftops
- print2array.m
- print2eps.m
- read_write_entire_textfile
- user_string
- using_hg2
common/kur
common/plot2svg
- demo_3d_plot2svg.m
- demo_svg_water
- plot2svg
- plot2svg
- simulink2svg
- svgAnimation
- svgBoundingBox
- svgClipping
- svgComposite
- svgDisplacementMap
- svgFlood
- svgGaussianBlur
- svgImage
- svgLuminanceToAlpha
- svgMorphology
- svgOffset
- svgSpecularLightingDistant
- svgTile
- svgTurbulence
- tutorial_filters
- tutorial_plot2svg
- tutorial_plot2svg_beta
common/ppg
common/prtools
- adaboostc
- affine
- arrfit
- averagec
- bagc.m
- bagcc.m
- baggingc
- band2obj.m
- bandsel.m
- bayesc.m
- bhatm.m
- bpxnc
- cat2data.m
- cdats.m
- checktoolbox.m
- chernoffm
- circles3d
- classc
- classd
- classim
- classnames
- cleval
- clevalb
- clevalf
- clevals
- closemess.m
- cmapm
- cnormc
- col2gray
- compute_kernel.m
- concatm.m
- confmat
- Contents.m
- costm
- createdatafile.m
- crossval
- data2im
- datafiles.m
- dataim
- datasetconv.m
- datasetm.m
- datasets.m
- datfilt
- datgauss
- datunif
- dcsc
- define_mapping.m
- delfigs.m
- dipbin
- dipim
- dipimagecheck.m
- diplibwarn.m
- disnorm
- disperror
- distm
- distmaha
- doublem.m
- dps.m
- drbmc
- dtc
- dyadicm.m
- edicon.m
- emclust
- fdsc.m
- feat2lab.m
- feat2obj.m
- feateval
- featrank
- featsel.m
- featselb
- featself
- featseli
- featsellr
- featselm
- featselo
- featselp
- featselv.m
- featsetc.m
- featsetcc.m
- ffnc
- file2dset
- filtim
- filtm
- findclasses
- fisherc
- fisherm
- fixedcc
- font_size
- gauss
- gaussm
- gencirc
- genclass
- gendat
- gendatb
- gendatc
- gendatd
- gendatgauss
- gendath
- gendati.m
- gendatk
- gendatl
- gendatlin
- gendatm
- gendatp
- gendatr
- gendats
- gendats
- gendatsin
- gendatsinc
- gendatv
- gendatw.m
- genlab
- gensubsets.m
- getfeat
- getlab
- getname.m
- getopt_pars.m
- getwindows.m
- gpr
- gridsize
- gtm
- hclust
- histm.m
- im2feat
- im2obj
- image_dbr
- immoments.m
- im_bdilation
- im_berosion
- im_box
- im_bpropagation
- im_center
- im_dbr.m
- im_features
- im_fft
- im_fill_norm.m
- im_gauss
- im_gauss
- im_gaussf
- im_gray
- im_harris.m
- im_hist.m
- im_hist_equalize
- im_invert
- im_label
- im_maxf
- im_mean
- im_measure
- im_minf
- im_moments.m
- im_norm.m
- im_patch
- im_profile
- im_resize.m
- im_rotate
- im_scale
- im_select_blob
- im_skel
- im_skel_meas
- im_stat
- im_stretch
- im_threshold
- invsigm
- iscomdset.m
- isdatafile
- isdataim
- isdataset
- isfeatim
- isgenerator
- ismapping
- isobjim
- isparallel
- issequential
- isstacked
- issym
- istrained
- isuntrained
- isvaldfile.m
- isvaldset.m
- is_scalar.m
- kcentres
- kernelc.m
- kernelm
- klldc
- klm
- klms
- kmeans
- knnc
- knnm
- knnr
- knn_map
- ksmoothr
- labcmp.m
- labeld
- labelim
- lassor
- ldc
- libsvc.m
- libsvmcheck.m
- linearr
- lines5d
- linewidth
- lkc.m
- lmnc
- logdens.m
- loglc
- loso.m
- lssvc
- makeqld.m
- map
- mapex
- mapm
- mappings.m
- mappingtools.m
- mapping_task.m
- marksize
- matchcost
- matchlab
- matchlablist
- maxc
- mclassc
- mclassm.m
- mds
- mdsc.m
- mds_cs
- mds_init
- mds_stress
- meanc
- meancov
- medianc
- minc
- misval
- mlrc
- modeclust.m
- modeseek
- modselc
- mogc
- multi_labeling.m
- myfixedmapping
- naivebc.m
- naivebcc
- nbayesc
- neurc
- newfig
- newline
- newline
- nfminbnd
- nlabcmp
- nlabeld
- nlfisherm
- nmc
- nmsc
- nodatafile
- normal_map
- normm
- nulibsvc.m
- nusvc.m
- nusvo
- nu_svr.m
- nu_svro
- obj2feat.m
- out2.m
- outm.m
- parallel
- parsc
- parzenc.m
- parzendc.m
- parzenm
- parzenml
- parzen_map
- pca
- pcaklm
- pcam
- pcldc
- perc
- perlc
- pinvr.m
- pklibsvc.m
- plotc
- plotd
- plotdg
- plote
- plotf
- plotgtm.m
- plotm
- ploto
- plotr
- plotsom
- plottarget
- plsm
- plsm
- pls_apply
- pls_prepro
- pls_train
- pls_transform
- pls_updstruct
- polyc
- prarff.m
- prcov
- prcrossval
- prcursor
- prdata
- prdatafiles.m
- prdataset
- prdatasets.m
- prdownload.m
- preig
- prex_cleval.m
- prex_combining.m
- prex_confmat.m
- prex_cost.m
- prex_datafile.m
- prex_datasets.m
- prex_density.m
- prex_eigenfaces.m
- prex_logdens.m
- prex_matchlab.m
- prex_mcplot.m
- prex_mds.m
- prex_parzen.m
- prex_plotc.m
- prex_regr.m
- prex_silhouette_classification.m
- prex_soft.m
- prex_som.m
- prex_spatm.m
- prforum.m
- prglobal.m
- primport
- prinv
- prkmeans
- prload.m
- prmap
- prmemory
- prnews.m
- procm
- prodc
- proxm
- prpinv
- prplotsom.m
- prprogress.m
- prrank
- prroc
- prsvd
- prtest.m
- prtestc.m
- prtestf.m
- prtools4to5.m
- prtools_mod.m
- prtrace
- prtver.m
- prversion
- prwaitbar.m
- prwaitbarinit.m
- prwaitbarnext.m
- prwaitbaronce.m
- prwarning
- pr_newrb
- qdc
- quadrc
- randomforestc
- randreset
- rblibsvc.m
- rbnc
- rbsvc.m
- Readme.m
- reducm
- regoptc.m
- reject
- rejectc.m
- rejectm
- remclass.m
- remoutl
- renumlab
- reorderclasses
- reorderdset
- resizem.m
- ridger
- rnnc
- roc
- rsquared
- rsscc.m
- runcells.m
- sammonm.m
- savedatafile.m
- scalem
- scatterd
- scatterdui
- scattern.m
- selclass
- seldat
- selectim.m
- sequential
- setbatch
- setdat
- setdata.m
- setdefaults.m
- setfeatsize
- setname.m
- shiftargin.m
- shiftop.m
- show.m
- showfigs.m
- sigm
- som
- spatm
- spirals
- stacked
- stamp_map.m
- statscheck.m
- statsdtc
- statsknnc
- statslinc
- statsnbc
- stumpc
- subsc
- svc
- svcinfo.m
- svc_nu.m
- svmr
- svo
- svo_nu
- testauc.m
- testc
- testcost
- testd
- testdatasize.m
- testk
- testn
- testp
- testr
- traincc
- trained_classifier.m
- trained_mapping.m
- treec
- tree_map
- tsnem
- txtread
- typp
- udc
- unitm
- unittm
- updstruct
- userkernel.m
- use_old_mapping_times.m
- vandermondem
- votec
- vpc
- weakc.m
- wvotec.m
common/prtools/@prdatafile
- abs.m
- addpostproc.m
- addpreproc.m
- and.m
- check12.m
- display.m
- dyadic.m
- end.m
- eq.m
- exp.m
- filenames.m
- find.m
- findfiles.m
- ge.m
- get.m
- getdata.m
- getdataset.m
- getfeatlab.m
- getfeatsize.m
- getfiles.m
- getpostproc.m
- getpreproc.m
- getsize.m
- gettype.m
- gt.m
- hist.m
- horzcat.m
- imread.m
- isempty.m
- isfinite.m
- isnan.m
- istype.m
- ldivide.m
- le.m
- log.m
- lt.m
- max.m
- mean.m
- median.m
- min.m
- minus.m
- mldivide.m
- mpower.m
- mrdivide.m
- mtimes.m
- ne.m
- not.m
- or.m
- plus.m
- power.m
- prdatafile.m
- prod.m
- rdivide.m
- readdatafile.m
- readdatafile2.m
- real.m
- set.m
- setdataset.m
- setfeatsize.m
- setfiles.m
- setpostproc.m
- setpreproc.m
- setraw.m
- settargets.m
- settype.m
- show.m
- sign.m
- size.m
- sqrt.m
- std.m
- struc.m
- subsasgn.m
- subsref.m
- sum.m
- times.m
- uminus.m
- uplus.m
- var.m
- vertcat.m
- xor.m
common/prtools/@prdataset
- abs.m
- addlabels.m
- addlablist.m
- addtargets.m
- and.m
- changelablist.m
- classsizes.m
- conj.m
- corrcoef.m
- crossval.m
- ctranspose.m
- cumsum.m
- curlablist.m
- dellablist.m
- det.m
- disp.m
- display.m
- double.m
- eig.m
- end.m
- eq.m
- exp.m
- find.m
- findfeatlab.m
- findident.m
- findlabels.m
- findnlab.m
- ge.m
- get.m
- getclassi.m
- getcost.m
- getdata.m
- getfeatdom.m
- getfeatlab.m
- getfeatsize.m
- getident.m
- getimheight.m
- getlabels.m
- getlablist.m
- getlablistnames.m
- getlabtype.m
- getname.m
- getnlab.m
- getobjsize.m
- getprior.m
- getsize.m
- gettargets.m
- getuser.m
- getversion.m
- gt.m
- hist.m
- horzcat.m
- hsv2rgb.m
- imsize.m
- inv.m
- invsig.m
- isempty.m
- isfinite.m
- islabtype.m
- isnan.m
- kmeans.m
- ldivide.m
- le.m
- length.m
- loadobj.m
- log.m
- lt.m
- max.m
- mean.m
- median.m
- min.m
- minus.m
- mldivide.m
- mpower.m
- mrdivide.m
- mtimes.m
- ndims.m
- ne.m
- not.m
- or.m
- pca.m
- pdist.m
- pinv.m
- plot.m
- plus.m
- power.m
- prdataset.m
- prforum_private.m
- prod.m
- rdivide.m
- real.m
- repmat.m
- rgb2hsv.m
- roc.m
- set.m
- setcost.m
- setdata.m
- setfeatdom.m
- setfeatlab.m
- setfeatsize.m
- setident.m
- setlabels.m
- setlablist.m
- setlablistnames.m
- setlabtype.m
- setname.m
- setnlab.m
- setobjsize.m
- setprior.m
- settargets.m
- setuser.m
- setversion.m
- show.m
- sign.m
- size.m
- sort.m
- sqrt.m
- std.m
- subsasgn.m
- subsref.m
- sum.m
- svd.m
- testfeatdom.m
- times.m
- uminus.m
- uplus.m
- var.m
- vertcat.m
- xor.m
common/prtools/@prmapping
- addpostproc.m
- and.m
- ctranspose.m
- disp.m
- display.m
- double.m
- end.m
- eq.m
- ge.m
- get.m
- getbatch.m
- getcost.m
- getdata.m
- getlabels.m
- getmapping_file.m
- getmapping_type.m
- getname.m
- getout_conv.m
- getscale.m
- getsize.m
- getsize_in.m
- getsize_out.m
- getuser.m
- gt.m
- horzcat.m
- isaffine.m
- isclassifier.m
- iscombiner.m
- isempty.m
- isfixed.m
- isfixed_cell.m
- isgenerator.m
- ldivide.m
- le.m
- lt.m
- minus.m
- mrdivide.m
- mtimes.m
- ne.m
- not.m
- or.m
- orth.m
- plot.m
- plotsom.m
- plus.m
- plus_org.m
- power.m
- prdataset.m
- prmapping.m
- rdivide.m
- set.m
- setcost.m
- setdata.m
- setlabels.m
- setmapping_file.m
- setmapping_type.m
- setname.m
- setout_conv.m
- setpostproc.m
- setscale.m
- setsize.m
- setsize_in.m
- setsize_out.m
- setuser.m
- show.m
- size.m
- subsasgn.m
- subsref.m
- times.m
- times_old.m
- uminus.m
- uplus.m
- vertcat.m
- xor.m
common/prtools/private
- bord
- covm
- expandd
- isdipimage.m
- isint
- isint
- is_scalar.m
- makeqld.m
- newline
- pd_check
- prdebug
- prmem
- resize
- strlab
common/prtools_addins
- CG_CLASSIFY
- CG_CLASSIFY_INIT
- classification_errors
- confmat_new
- countTransitions
- dbnc
- dbnFit
- dbnPredict
- distmaha_new
- distm_new
- emclust
- emclust_new
- feateval_new
- findoutl
- gaussm
- generalized_qdc
- getident_multids
- getnlab_multids
- hmmViterbiCM
- hmm_prtools
- labeld
- logistic.m
- loglc
- matchlab_new
- meancov_new
- minimize
- mogc
- my_remclass.m
- normalize
- normal_map_new
- normal_map_new
- nusvc.m
- nusvc_new.m
- nusvo
- nusvo_new
- plotc
- plotc
- plotm
- plotm
- prepareArgs
- process_options
- prroc_new
- prtools_mod.m
- prversion
- qdc_new
- qdc_new1
- rbmBB
- rbmPredict
- rbmVtoH
- rejectc_balanced.m
- rejectm_balanced
- roc
- roc_detection
- scatterd
- weighted_ldc
- weighted_qdc
common/prtools_addins/private
- bord
- covm
- expandd
- isdipimage.m
- isint
- isint
- is_scalar.m
- makeqld.m
- newline
- pd_check
- prdebug
- prmem
- resize
- strlab
common/wavedet
- buscamin
- delineate3D
- delineateP3D
- fiducialf
- how_to_use.m
- isqrs
- isqrs
- locmax
- multiqrsend
- multiqrson
- nancov
- nanmax
- nanmean
- nanmedian
- nanmin
- nanstd
- nansum
- nanvar
- objfun2
- optimline
- picant
- picpost
- pos2ann
- posmat
- prepECG
- pwavef
- pwave_task1.m
- qrscandidatesnew
- qrswavef
- qspfilt5
- randsample
- readECG_v1
- reportECG
- rmanot.m
- searchbk
- searchoff
- searchon
- signaltest
- sincronizabeats
- SLR
- SLR2
- t5.m
- Tbeginauxiliar.m
- twave3D
- twavef
- wavedet
- wavedet_3D
- wavedet_interface
- wavt
- wavt5
- zerocros
examples
Versions that use the GitHub default branch cannot be downloaded
Version | Published | Release Notes | |
---|---|---|---|
1.4.0.0 | Some minor fixes since v0.1.1 specially for MAC users.
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1.2.0.0 | Nothing |
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1.1.0.0 | More info in the toolbox web page ! http://marianux.github.io/ecg-kit/ or in the repository itself |
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1.0.0.0 |
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