qMRLab

version 2.4.1 (21.5 MB) by Agah Karakuzu
Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: Use GUI or CLI to fit and simulate a myriad of qMRI models.

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Updated 14 Jul 2022

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qMRLab

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hdr

qMRLab is an open-source software for quantitative MR image analysis.

Our main goal is to provide the community with an intuitive tool for data fitting, plotting, simulation and protocol optimization for a myriad of different quantitative models. The modularity of the qMRLab framework makes it easy to add any additional modules and we encourage everyone to contribute their favorite recipe for qMR!

For documentation 📖, visit the Documentation website.

If you are a developer 🛠, please visit the Wiki page.

Please report any bug 🐛 or suggestions 💭 in GitHub.

For interactive tutorials 🎚, blog posts 🖋 and more, you can visit qMRLab portal.

qMRLab is a fork from the initial project qMTLab.


FROM SCANNER

Version controlled, fully transparent & vendor-neutral pulse sequences 🌀.

⬇️

Data-driven, container-mediated, platform-agnostic & BIDS compatible workflows 🔀.

⬇️

Reproducible & modern publication 📚 objects.

TO PUBLICATION


References

qMRLab

Applications

Interactive Tutorials

Awards

  • Karakuzu A. ISMRM Research Exchange Grant 2020
  • Karakuzu A. et al. Quantitative MR Study Group Competition, second place, ISMRM 2019
  • Boudreau M. et al. Junior Fellows Symposium Challenge, Africa challenge winner, ISMRM 2019
  • Karakuzu A. et al. Magnetic Moments, People's Choice Award, ISMRM 2018

Sponsored by

Citation

If you use qMRLab in you work, please cite:

Karakuzu A., Boudreau M., Duval T.,Boshkovski T., Leppert I.R., Cabana J.F., Gagnon I., Beliveau P., Pike G.B., Cohen-Adad J., Stikov N. (2020), qMRLab: Quantitative MRI analysis, under one umbrella doi: 10.21105/joss.02343

OSF


The MIT License (MIT)

Copyright (c) 2016 NeuroPoly, Ecole Polytechnique, Universite de Montreal

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Cite As

Karakuzu, Agah, et al. “QMRLab: Quantitative MRI Analysis, under One Umbrella.” Journal of Open Source Software, vol. 5, no. 53, The Open Journal, Sept. 2020, p. 2343, doi:10.21105/joss.02343.

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MATLAB Release Compatibility
Created with R2015b
Compatible with R2014b and later releases
Platform Compatibility
Windows macOS Linux

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External/NODDI_toolbox_v1.0/models/watson

External/SOMA

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External/imtool3D_td/External/bids-matlab/+bids/private

External/imtool3D_td/External/dndcontrol

External/imtool3D_td/External/interpmask

External/imtool3D_td/External/mask2poly

External/imtool3D_td/External/reduce_poly

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Test

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src/Addons/SimProtocolOpt

src/Addons/SimRnd

src/Addons/SimVary

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src/Common/blochsim

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src/Models/Magnetization_transfer

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src/Models/Processing

src/Models/QSM

src/Models/T1_relaxometry

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src/Models_Functions/DTIfun

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src/Models_Functions/SPGRfun/functions

src/Models_Functions/bSSFPfun

src/Models_Functions/bSSFPfun/functions

src/Models_Functions/vfa_t1

External/gencode/examples

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To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.