VolumeCut allows you to cut an image volume along surfaces of arbitrary shape.
Surfaces are defined by interpolation of sets of coordinates (X,Y,Z) provided by the user as a Matlab marix [n x 3].
Features of this app include:
+ Support for input image format: 8-bit 3D TIFF
+ Automatic voxel calibration when images are saved with ImageJ / FIJI
+ Custom offset can be defined for each surface
+ Custom smoothness level of interpolated surface
+ 4 different cut modes allowing to provide up to three cutting surfaces
+ Volume visualization using Matlab's 3D volume renderer
+ Save cut image volumes with black voxels in the cut region
+ Save masks used to cut the image stack
+ Mathematical operations on 3D masks: unite, intersect, exclude, subtract, invert, find edges, fill holes, close
+ Display and manipulate digital skeletons created with ImageJ's Simple Neurite Tracer
To download the latest version and for more information, visit: https://lucadellasantina.github.io/VolumeCut/
Citation pour cette source
Luca Della Santina (2024). VolumeCut (https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.3), GitHub. Récupéré le .
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Version | Publié le | Notes de version | |
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6.3 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.3 |
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6.1.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.1 |
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6.0.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.0 |
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5.1.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v5.1 |
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5.0.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v5.0 |
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4.9.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.9 |
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4.8 | Support for 2D binary masks
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4.7.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.7 |
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4.6 | New Automation option to intensity histograms within masked volume
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4.5 | Automated tab allows batch measurements across mask images |
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4.4.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.4 |
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4.3 | Fixed bug causing missing interactivity with 3D plots |
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4.2.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.2 |
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4.0 | Digital skeleton management |
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3.3 | "Close" and "Fill Holes" now iterate on each Z plane individually for better results than the old pure 3D functions. |
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3.2 | New mask functionalities: Erode, Dilate, Close, Fill, Skeletonize, Ultimate erode, Median filtering |
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3.1 | Mask info button shows mask statistics and overlap volume |
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3.0 |
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2.3.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v2.3 |
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2.2.0.0 | See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v2.2 |