scGEAToolbox (single-cell Gene Expression Analysis Toolbox)

Version 24.4.2 (241 Mo) par James Cai
Single-cell Gene Expression Analysis Toolbox
5.0
(2)
1,1K téléchargements
Mise à jour 19 avr. 2024
Afficher la licence sur GitHub

scGEAToolbox - a Matlab toolbox for single-cell RNA-seq data analyses

View scGEAToolbox on File Exchange

Quick Installation

Run the following code in MATLAB:

unzip('https://github.com/jamesjcai/scGEAToolbox/archive/main.zip');
addpath('./scGEAToolbox-main');

Getting Started Quickly Using the SCGEATOOL App

Run the following code in MATLAB to start:

scgeatool

Open in MATLAB Online

Read Documentation

scGEAToolbox Documentation

SEE ALSO - Standalone Application SCGEATOOL :: Single-Cell Gene Expression Analysis Tool

SCGEATOOL is a standalone application running on Windows machines that do not have MATLAB installed. SCGEATOOL is a lightweight and blazing fast desktop application that provides interactive visualization functionality to analyze single-cell transcriptomic data. SCGEATOOL allows you to easily interrogate different views of your scRNA-seq data to quickly gain insights into the underlying biology. SCGEATOOL is a pre-compiled standalone application developed in MATLAB. Pre-compiled standalone releases are meant for those environments without access to MATLAB licenses. Standalone releases provide access to all of the functionality of the SCGEATOOL standard MATLAB release encapsulated in a single application. SCGEATOOL is open-sourced to allow you to experience the added flexibility and speed of the MATLAB environment when needed.

Help

If you have any questions or require assistance using scGEAToolbox, please contact me.

Citation

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019;btz830. doi:10.1093/bioinformatics/btz830

Citation pour cette source

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019 Nov 7:btz830. doi: 10.1093/bioinformatics/btz830. PMID: 31697351.

Compatibilité avec les versions de MATLAB
Créé avec R2023b
Compatible avec toutes les versions
Plateformes compatibles
Windows macOS Linux
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Les versions qui utilisent la branche GitHub par défaut ne peuvent pas être téléchargées

Version Publié le Notes de version
24.4.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.2
24.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.0
24.3.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.9
24.3.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.8
24.3.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.7
24.3.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.6
24.3.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.5
24.3.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.4
24.3.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.3
24.3.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.2
24.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.1
24.3.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.0
24.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.2.0
24.1.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.3
24.1.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.1
24.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.0
23.9.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.9.0
23.8.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.8.0
23.7.0

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23.6.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.6.5
23.6.0.0

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23.5.0.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.5.0
23.4.7.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.7
23.4.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.6
23.4.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
23.4.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.4
23.4.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.2
23.4.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.1
23.3.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.2
23.3.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.1
23.3.0.0

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23.2.6.0

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23.2.4.0

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23.2.3.0

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23.2.1.0

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23.1.4.0

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23.1.3.0

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23.1.2.0

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23.1.1.0

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22.9.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.9.1
22.7.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.7.1
22.6.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.6.1
22.4.11

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.11
22.4.1

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22.3.6

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22.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.3.1
22.2.21

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22.2.9

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22.1.31

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22.1.30

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22.1.29

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22.1.23

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22.1.19

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22.1.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.13
21.12.28

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21.12.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.13
21.12.10

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.10
21.12.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.8
21.12.04

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21.11.19

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21.11.18

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21.11.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.13
21.11.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.6
21.10.17

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21.9.30

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.30
21.9.23

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21.9.7

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21.9.3

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21.9.2

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21.8.29

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21.8.24

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.24
21.8.9

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21.8.4

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21.8.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.1
21.7.29.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.7.29
21.7.26

new doc
21.7.14

new title
21.7.13

indicates the folder to be added when installing add-on
21.1.16

sc_scatter
21.1.15

SC_SCATTER(X, genelist)
21.1.14

Try new function: SC_SCATTER.m
Read documentation URL: https://scgeatoolbox.readthedocs.io/
20.8.2

add sc_celltypeexplorer_auto
20.7.5

cell marker gene identification function added.

1.0.0

Pour consulter ou signaler des problèmes liés à ce module complémentaire GitHub, accédez au dépôt GitHub.
Pour consulter ou signaler des problèmes liés à ce module complémentaire GitHub, accédez au dépôt GitHub.