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How to find probability of classification in boosted tree (AdaboostM2)
For AdaBoostM1 you can convert scores into probabilities by assigning string 'doublelogit' to the ScoreTransform property of the...

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Uniform class probabilities vs. Empirical class probabilities
If you are still looking for an answer, there is only one definition for error. In each case, you form a confusion matrix and th...

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Why is LASSO in MATLAB so slow in the case of highly correlated predictors?
There could be many reasons. The |lasso| function has a lot of flexibility, so make sure you are comparing apples and apples. To...

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Why SVM is not giving expected result
This is a difficult problem for SVM. SVM performs best when two classes are separable or have a modest overlap. This is not the ...

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What prediction model is used in MATLAB regression tree nodes / leaves?
The prediction of a regression tree is the mean of observed responses over observations landing on this node. If you passed in o...

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Fit - Nonlinear Regression - can this run faster? Python >20x faster?
I am no expert on image processing, but based on your code samples, you don't need to use |fitnlm|. When you do this x = im...

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How do I use the new Support Vector Machine Regression model to simulate the response of new predictors?
This likely means that some variables in the new data have values well outside their ranges in the training data. Think about wh...

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SVM (fitcecoc): norm(Mdl.BinaryLearners{1}.Beta) does not equal 1
You need to read the whole section and the one that follows, Computing the support vector classifier. If you, you will notice th...

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GPU computing for machine learning (bagging / ensemble)
There is no GPU support for decision trees or their ensembles. If you work in a sufficiently recent release, decision trees are ...

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How to access training data in regression trees in TreeBagger
Logical indices of observations used for each tree are stored in the |OOBIndices| property. This property wouldn't tell you thou...

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SVM with Dummy Variables
Just convert your cell array into a matrix. Yes, dummy variables will lose their identity in the sense that different levels of ...

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Defining cost function in partitioned SVM model
_So, my question is: does Matlab update the the priors and reset the cost function to the default as an equivalent operation to ...

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Score calculation in ClassificationSVM using linear kernel function
In 14a and 14b, the Beta coefficients of an SVM model need to be divided by KernelParameters.Scale to get correct predictions. I...

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SVM: How is the classification error with leave-one-out cross validation calculated?
|fitcsvm| passes class prior probabilities found *from the entire data* into each fold. Look at |CVSVMModel.Trained{1}.Prior|, |...

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Classification / Regression Trees for multiple responses?
Suppose your predictors are arranged in matrix X of size N-by-P and your responses are arranged in matrix Y of size N-by-R. Then...

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Save Regression Tree using Matlab commands
You can choose SaveAs from the figure pop-up menu when you click on File in the upper left corner. If you can't find SaveAs f...

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Differences between svmtrain and fitcsvm
Look at the doc/help for |fitcsvm| or, alternatively look at the |ConvergenceInfo| property in the returned object. There are se...

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svmtrain compared to fitcsvm
Check the |ConvergenceInfo.Converged| property of the returned object to see if optimization converged. This behavior of |fit...

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How to set Sigma value in CompactClassificationSVM in Matlab
Binary SVM models trained by ECOC are saved in the BinaryLearners property, which is a cell array. You can't change the Sigma pr...

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How to input scores to the predict function
The error message says "You must pass scores as a vector..." You are passing it as a matrix with two columns. How would |perfcur...

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how to transform output SVM into probability?
If you have the Statistics and Machine Learning Toolbox in a sufficiently recent MATLAB release, use the |fitcecoc| function and...

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Cross-validation ROC curve in discriminant analysis
In principle, I don't see anything wrong with your proposal 1. There is a caveat however. You shouldn't use the same data to obt...

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How do I get the "depth" of a tree?
This should work: function depth = treedepth(tree) parent = tree.Parent; depth = 0; node = parent(end); ...

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ROC analysis and perfcurve
How about putting a minus sign in front of the scores (2nd input to |perfcurve|)?

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LDA: ordinal vs. categorical response
There is a difference. This choice, ordinal vs nominal, should be driven by what your response variable represents. If you ha...

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Is it possible to set specific OOBIndices in TreeBagger
To train TreeBagger, you pass X and Y. If "image" is your entire data X and if "areas" are your class labels Y, you already have...

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LDA transformation matrix for discriminative feature extraction
I don't know how you define W (when I click on the link, I get a 404 error not found). But I can make an observation: A correctl...

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Why does TreeBagger in Matlab 2014a/b only use few workers from a parallel pool?
TreeBagger does not limit the number of used cores in any way. Everything is set by your parpool configuration. The answer m...

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SVM convergence info objective function value - can I use it for feature selection?
There is no paper attached, and even if there was, it's unlikely I would read it. What you want to use as an indicator of the fe...

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