bioinfo.pipeline.Pipeline
Pipeline object to build and run end-to-end bioinformatics analyses and workflows
Since R2023a
Description
The bioinfo.pipeline.Pipeline
object lets you construct and
execute bioinformatics pipelines and workflows to analyze genomic data.
Creation
Create the object using bioinfo.pipeline.Pipeline
.
Properties
Object Functions
addBlock | Add blocks to pipeline |
blockName | Return the names of specified blocks in pipeline |
cancel | Cancel blocks in pipeline that are running in parallel |
compile | Verify pipeline structure and check for warnings and errors |
connect | Connect two blocks in pipeline |
copy | Copy array of handle objects |
deleteResults | Delete block results from pipeline |
disconnect | Remove connection between ports in a pipeline |
fetchResults | Wait for parallel-running block to finish and return its results |
findBlock | Get block objects from bioinformatics pipeline |
inputNames | Get names of unconnected block inputs from pipeline |
portMap | Show connected ports between two blocks |
processTable | Return information about all processes in pipeline |
removeBlock | Remove blocks from pipeline |
renameBlock | Rename block in pipeline |
results | Get bioinformatics pipeline results |
run | Run pipeline |
wait | Wait for running blocks to complete |
Examples
Version History
Introduced in R2023a