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I am trying to create a 3D model of a liver but the model that is created using Volume Viewer is the mirror image. The file that I am loading is a nifti file that was generated from a liver segmentation algorithm. Is there any way to flip the liver so that I get the 3D mirror image? I tried changing the orientation in ITK-SNAP but the results were the same.

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Matt J
Matt J le 9 Nov 2021

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Couldn't you read the data into Matlab as a 3D array and permute() it?

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Robert Lubenow
Robert Lubenow le 10 Nov 2021
Thank you Matt! Very simple solution that worked perfectly. I loaded the nifti file using niftiread(), then flip(nifti, 1). The resulting image is what I was looking for.
Matt J
Matt J le 10 Nov 2021
Glad it worked, but please accept-click the answer to indicate that it did.

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