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Dear all, I was run the VGG19 using apps designer. But I got error.
**The workspace of data as attached. (matlab.mat)
Anyone can help me?
Because actually I dont understand what fullyconnected function
clc
clear all
close all
%testDataimages
DATASetDir = fullfile('C:\Users\Akmal\Desktop\NEW 3D U NET');
IMAGEDir = fullfile(DATASetDir,'ImagesTr');
volReader = @(x) matRead(x);
volds = imageDatastore(IMAGEDir, ...
'FileExtensions','.mat','ReadFcn',volReader);
% labelReader = @(x) matread(x);
matFileDir = fullfile('C:\Users\Akmal\Desktop\NEW 3D U NET\LabelsTr');
classNames = ["background", "tumor"];
pixelLabelID = [0 1];
% pxds = (LabelDirr,classNames,pixelLabelID, ...
% 'FileExtensions','.mat','ReadFcn',labelReader);
pxds = pixelLabelDatastore(matFileDir,classNames,pixelLabelID, ...
'FileExtensions','.mat','ReadFcn',@matRead);
volume = preview(volds);
label = preview(pxds);
up1 = uipanel;
h = labelvolshow(label, volume, 'Parent', up1);
h.CameraPosition = [4 2 -3.5];
h.LabelVisibility(1) = 0;
h.VolumeThreshold = 0.5;
volumeViewer(volume, label)
patchSize = [128 128 64];
patchPerImage = 16;
miniBatchSize = 8;
patchds = randomPatchExtractionDatastore(volds,pxds,patchSize, ...
'PatchesPerImage',patchPerImage);
patchds.MiniBatchSize = miniBatchSize;
dsTrain = transform(patchds,@augment3dPatch);
volLocVal = fullfile('C:\Users\Akmal\Desktop\NEW 3D U NET\imagesVal');
voldsVal = imageDatastore(volLocVal, ...
'FileExtensions','.mat','ReadFcn',volReader);
lblLocVal = fullfile('C:\Users\Akmal\Desktop\NEW 3D U NET\labelsVal');
pxdsVal = pixelLabelDatastore(lblLocVal,classNames,pixelLabelID, ...
'FileExtensions','.mat','ReadFcn',volReader);
dsVal = randomPatchExtractionDatastore(voldsVal,pxdsVal,patchSize, ...
'PatchesPerImage',patchPerImage);
dsVal.MiniBatchSize = miniBatchSize;
layers = [
image3dInputLayer([128 128 64 1],"Name","image3dinput")
convolution3dLayer([3 3 3],32,"Name","conv3d_1","Padding","same")
reluLayer("Name","relu_1")
convolution3dLayer([3 3 3],32,"Name","conv3d_2","Padding","same")
reluLayer("Name","relu_2")
maxPooling3dLayer([5 5 5],"Name","maxpool3d_1","Padding","same")
convolution3dLayer([3 3 3],32,"Name","conv3d_3","Padding","same")
reluLayer("Name","relu_3")
convolution3dLayer([3 3 3],32,"Name","conv3d_4","Padding","same")
reluLayer("Name","relu_4")
maxPooling3dLayer([5 5 5],"Name","maxpool3d_2","Padding","same")
convolution3dLayer([3 3 3],32,"Name","conv3d_5","Padding","same")
reluLayer("Name","relu_5")
convolution3dLayer([3 3 3],32,"Name","conv3d_6","Padding","same")
reluLayer("Name","relu_6")
convolution3dLayer([3 3 3],32,"Name","conv3d_7","Padding","same")
reluLayer("Name","relu_7")
convolution3dLayer([3 3 3],32,"Name","conv3d_8","Padding","same")
reluLayer("Name","relu_8")
maxPooling3dLayer([5 5 5],"Name","maxpool3d_3","Padding","same")
convolution3dLayer([3 3 3],32,"Name","conv3d_9","Padding","same")
reluLayer("Name","relu_9")
convolution3dLayer([3 3 3],32,"Name","conv3d_10","Padding","same")
reluLayer("Name","relu_10")
convolution3dLayer([3 3 3],32,"Name","conv3d_11","Padding","same")
reluLayer("Name","relu_11")
convolution3dLayer([3 3 3],32,"Name","conv3d_12","Padding","same")
reluLayer("Name","relu_12")
maxPooling3dLayer([5 5 5],"Name","maxpool3d_4","Padding","same")
convolution3dLayer([3 3 3],32,"Name","conv3d_13","Padding","same")
reluLayer("Name","relu_13")
convolution3dLayer([3 3 3],32,"Name","conv3d_14","Padding","same")
reluLayer("Name","relu_14")
convolution3dLayer([3 3 3],32,"Name","conv3d_15","Padding","same")
reluLayer("Name","relu_15")
convolution3dLayer([3 3 3],32,"Name","conv3d_16","Padding","same")
reluLayer("Name","relu_16")
maxPooling3dLayer([5 5 5],"Name","maxpool3d_5","Padding","same")
fullyConnectedLayer(10,"Name","fc_3")
reluLayer("Name","relu_18")
dropoutLayer(0.5,"Name","dropout_1")
fullyConnectedLayer(10,"Name","fc_2")
reluLayer("Name","relu_17")
dropoutLayer(0.5,"Name","dropout_2")
fullyConnectedLayer(10,"Name","fc_1")
softmaxLayer("Name","softmax")
pixelClassificationLayer("Name","pixel-class")];
plot(layerGraph(layers));
ERROR

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