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How to calculate the dice similarity coefficient

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mohd akmal masud
mohd akmal masud le 12 Oct 2023
Réponse apportée : Rik le 12 Oct 2023
Dear All,
Anyone know how to calculate the dice similarity my image data set as attached.

Réponse acceptée

Rik
Rik le 12 Oct 2023
Let's first see what you have in those mat files:
s1=load('prediction.mat')
s1 = struct with fields:
allBW: [130×130×90 logical]
s2=load('groundtruth.mat')
s2 = struct with fields:
allBW: [130×130×90 logical]
So you have two equal-sized binary arrays.
Ten seconds of Googling ('wiki dice coefficient') can give you this formula:
dice = 2*union of X and Y / X+Y
Now you only have to implement this in Matlab.
X = s1.allBW;
Y = s2.allBW;
X = X(:);Y = Y(:); % linearize to make notation clearer
DSC = (2*sum(X&Y))/(sum(X)+sum(Y))
DSC = 0.8806
We can check this implementation by using the other notation:
DSC = 2TP/(2TP+FP+FN)
% (for the calculation X and Y can either be the ground truth, the DSC will
% have the same value)
TP = sum( X& Y);
FP = sum( X&~Y);
FN = sum(~X& Y);
DSC = 2*TP/(2*TP+FP+FN)
DSC = 0.8806

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