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Semi-automatic cell segmentation to be converted to GUI

3 vues (au cours des 30 derniers jours)
Peyman Obeidy
Peyman Obeidy le 29 Mar 2017
Commenté : Peyman Obeidy le 30 Mar 2017
I find it difficult to find an algorithm that can always come up with a reasonable segmentation of cells in microscopy fluorescent images. Therefore I decide to write a semi-automatic segmentation code. The code initially generates a rough cell segmentation mask and then the user is prompted to add or subtract the ROI in the rough mask. The code and a sample image are attached, I have very limited experience with GUI. I would greatly appreciate it if you can help me to convert this into a GUI. In it in return, I am happy to include your name in acknowledgement of any publication that comes out of this work.
The main code is called "SemiAutoMaskingSegmV2while".
PS. at the moment you dont see the original image with the updated mask, I need to improve this as well.
Best regards Peyman
  5 commentaires
Jan
Jan le 29 Mar 2017
It will be easier to answer if you ask specific questions.
Peyman Obeidy
Peyman Obeidy le 30 Mar 2017
I understand what you mean, but this a potential collaboration opportunity

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