Effacer les filtres
Effacer les filtres

Prompt the user to enter three triplets.Loop through the DNA array and record all of the locations of the given triplets (codons)

1 vue (au cours des 30 derniers jours)
Write a script file called count_script that will do the following:
⦁ Import the text file sequence_long.txt into MATLAB
⦁ Prompt the user to enter three triplets.
Loop through the DNA array and record all of the locations of the given triplets (codons).
⦁ From Matlab, create a text file called report_count.txt and add to this file:
The total number of first codons found and first 10 locations (offsets) for the first codon.
⦁ The total number of second codons found and first 10 locations (offsets) for the second codon.
⦁ The total number of third codons found and first 10 locations (offsets) for the third codon.
So basically my question is how do I make a loop so it can look through the text file that contains DNA codons and make it identify the location of the codons the user inputs.
This is how far I got:
clc
longsequence=fopen('sequence_long.txt');
triplets=input('Enter three triplets :','s');
%triplets will be a set of three codons
and this is my other attempt:
filename='sequence_long.txt';
longsequence=importdata('sequence_long.txt');
sequence_long=longsequence.data;
triplets=input('Enter three triplets');
%triplets will be a set of three codons
but I don't know how to start the loop for the array file

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