correlation map sorted by hierarchy with dendrogram
8 vues (au cours des 30 derniers jours)
Afficher commentaires plus anciens
Hey.
I have a matrix of featurs X samples. I want to plot a correlation map between the features (features X features) that will be sorted by hierarchical clustering and I want the dendrogram to be ploted on the figure.
I have tried clustergram and cluster only on features but it creates a featurs X samples map sorted by features. How can I use this sorting for the correlation matrix?
I've also tried to to use linkage and sort the correlation matrix by optimalleaforder but then I don't know how to plot the dendrogram above the image, and I'm also not sure I'm doing it right.
this is the linkage way I tried:
tree = linkage(data,'single','correlation');
dist = 1-corr(data');
dist=round(dist,5);
leafOrder = optimalleaforder(tree,dist);
corr_map = corr(data');
figure, imagesc(corr_map(leafOrder,leafOrder)-eye(sum(num_features)))
What is the best way to do it?
Thanks for your help!
Oded
0 commentaires
Réponses (0)
Voir également
Catégories
En savoir plus sur Expression Analysis dans Help Center et File Exchange
Produits
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!