Script no longer working, help needed

I have a script that I would run to batch pre-process some data that worked well in the past. I had it on another computer running Matlab but recently installed the Student version R2012a on my personal computer. After adjusting the script to reflect the new directories, it no longer works. I'll post the script as well as the error messages (which I can't make sense of), and any help or suggestions are greatly appreciated!
clear
clc
disp('Working...')
subject = {'Sub_101' 'Sub_102' 'Sub_103' 'Sub_104' 'Sub_105' 'Sub_106' 'Sub_107' 'Sub_108' 'Sub_109' 'Sub_110' 'Sub_111' 'Sub_112' 'Sub_113' 'Sub_114' 'Sub_115' 'Sub_116' 'Sub_117' 'Sub_118' 'Sub_119' 'Sub_120' 'Sub_121' 'Sub_122' 'Sub_123' 'Sub_124' 'Sub_126' 'Sub_127'} %creates a variable called subject which can be a list of files
%User's paths
pathname_read = '/Users/Myname/Documents/York/KE Monolinguals/BDF Data/';
pathname_write = '/Users/Myname/Documents/York/KE Monolinguals/Prearf/';
nsubj = length(subject); %number of subjects
for s=1:nsubj
sname = [pathname_read subject{s} '_KE.bdf'];
if exist(sname, 'file')>0
fprintf('Processing Subject #%g : %s part %g...\n', s, subject{s})
EEG = pop_biosig(sname, 'ref', [65 66]);
EEG = eeg_checkset(EEG);
EEG = pop_chanedit(EEG, 'lookup','/Program Files (x86)/MATLAB/R2012a Student/eeglab12_0_2_0b/plugins/dipfit2.2/standard-10-5-cap385.elp');
EEG = eeg_checkset(EEG);
EEG = pop_creabasiceventlist(EEG, '', {'boundary'}, {-99});
EEG = eeg_checkset(EEG);
EEG = pop_binlister( EEG, '/Users/Myname/Documents/York/KE Monolingual/Scripts/KE_bin_descriptor.m', 'no', '', 0, [], [], 1, 0, 0);
EEG = pop_saveset(EEG, 'filename', [subject{s} '_raw.set'], 'filepath', pathname_write);
EEG = eeg_checkset(EEG);
EEG = pop_basicfilter( EEG, 1:70, 0.01, 80, 2, 'butter', 1, [] );
EEG = eeg_checkset(EEG);
EEG = pop_epochbin( EEG , [-200.0 800.0], 'pre');
EEG = pop_saveset(EEG, 'filename', [subject{s} '_be.set'], 'filepath', pathname_write);
EEG = eeg_checkset(EEG);
else fprintf('\n *** WARNING: %s does not exist *** \n\n', sname);
end
end
And the error message that pops up after running it:
Working...
subject =
Columns 1 through 10
'Sub_101' 'Sub_102' 'Sub_103' 'Sub_104' 'Sub_105' 'Sub_106' 'Sub_107' 'Sub_108' 'Sub_109' 'Sub_110'
Columns 11 through 20
'Sub_111' 'Sub_112' 'Sub_113' 'Sub_114' 'Sub_115' 'Sub_116' 'Sub_117' 'Sub_118' 'Sub_119' 'Sub_120'
Columns 21 through 26
'Sub_121' 'Sub_122' 'Sub_123' 'Sub_124' 'Sub_126' 'Sub_127'
Processing Subject #1 : Sub_101 part Reading data in BDF format... eeg_checkset note: upper time limit (xmax) adjusted so (xmax-xmin)*srate+1 = number of frames Importing data events... eeg_checkset note: creating the original event table (EEG.urevent) Re-referencing... Re-referencing data eeg_checkset note: re-creating the original event table (EEG.urevent) readlocs(): 'BESA' format assumed from file extension Error using readlocs>load_file_or_array (line 624) readlocs(): cannot find the named file or variable, check syntax
Error in readlocs (line 405) array = load_file_or_array( filename, g.skiplines);
Error in pop_chanedit (line 823) tmplocs = readlocs( chaninfo.filename, 'defaultelp', 'BESA' );
Error in KE_prearf (line 24) EEG = pop_chanedit(EEG, 'lookup','/Program Files (x86)/MATLAB/R2012a Student/eeglab12_0_2_0b/plugins/dipfit2.2/standard-10-5-cap385.elp');
Any input is really appreciated, thank you!

2 commentaires

Processing Subject #1 : Sub_101 part Reading data in BDF format...
eeg_checkset note: upper time limit (xmax) adjusted so (xmax-xmin)*srate+1 = number of frames
Importing data events...
eeg_checkset note: creating the original event table (EEG.urevent) Re-referencing...
Re-referencing data eeg_checkset
note: re-creating the original event table (EEG.urevent) readlocs(): 'BESA' format assumed from file extension
Error using readlocs
>load_file_or_array (line 624)
readlocs(): cannot find the named file or variable, check syntax
Error in readlocs (line 405)
array = load_file_or_array( filename, g.skiplines);
Error in pop_chanedit (line 823)
tmplocs = readlocs( chaninfo.filename, 'defaultelp', 'BESA' );
Error in KE_prearf (line 24)
EEG = pop_chanedit(EEG, 'lookup','/Program Files (x86)/MATLAB/R2012a Student/eeglab12_0_2_0b/plugins/dipfit2.2/standard-10-5-cap385.elp');
Never used any of the BDF stuff but it looks like there's a name resolution problem down at the bottom -- the first error is the one about "readlocs() can't find the named file or variable, check syntax" the rest after that is the callback stack back to the calling statement in the script.
What, precisely caused it I don't know but that's the klew...
Thanks, I fixed the first error (my directory for the scalp map was missing a folder), but now when I try to run it I get this error:
Error using pop_creabasiceventlist (line 146)
Argument '' did not match any valid parameter of the parser.
Error in KE_prearf (line 27)
EEG = pop_creabasiceventlist(EEG, '', {'boundary'}, {-99}, 1);
Have no idea how to fix this as even using the EEGLAB GUI I can't seem to create an event list on individual data. When attempting that, I get an 'invalid file identifier' error. Any suggestions?

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le 28 Août 2013

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