Ciaran

Newcastle University

Actif depuis 2014

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Reordering matrix columns to be the same in two matrices
I have two matrices one containing experimental and the other simulated output from an ODE model and I want to subtract the simu...

environ 9 ans il y a | 1 réponse | 0

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Question

How to Iterate over the columns of a Matlab table?
How can I iterate over the columns of a Matlab table? The Python equivalent and assuming data was a pandas data frame would be: ...

environ 9 ans il y a | 3 réponses | 1

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réponses

Question

Convert SBML model into simulatable Matlab function
I'm looking for a tool to convert a SBML model into a simultable Matlab function. I've tried SBMLTranslate() function from libSB...

environ 9 ans il y a | 1 réponse | 0

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Question

Plotting multiple boxplots in one figure from cell array
I'm trying to plot some boxplots on the same figure. My Code d={12.9089000000000,'GA';13.3697000000000,'GA';13.4...

plus de 9 ans il y a | 1 réponse | 0

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Question

Problem trying to get the Maple Toolbox to install
I am in the process of trying to install the Maple toolbox for Matlab. I have downloaded the Maple toolbox and am trying to foll...

plus de 9 ans il y a | 1 réponse | 0

1

réponse

Question

Fit data to a hill equation using lsqnonlin
Hi guys, I'm trying to fit some data to a hill equation. My X-Axis: Agonist = [0.1 0.5 1 5 10 19 50 100 114 500 100...

plus de 9 ans il y a | 1 réponse | 0

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Question

Compiling C and Fortran source files in a single call to MEX.
I'm having difficulties installing PottersWheel toolbox for Matlab 64-bit. The error message I get is: Problem detected at 2...

plus de 9 ans il y a | 1 réponse | 0

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Question

Error when trying to install PottersWheel
I am attempting to install PottersWheel for Matlab and I keep running into the following error: Problem detected at 2015-03-...

plus de 9 ans il y a | 1 réponse | 0

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Question

Integration tolerance not met in SimBiology?
I am in the process of trying to use SimBiology to fit some data to my model. I have imported a SBML file that was constructed u...

plus de 9 ans il y a | 1 réponse | 0

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Question

Convert SimBiology model to script format.
Is there any way to import a SMBL using SimBiology (either code or GUI) then automatically produce the code for that model in sc...

presque 10 ans il y a | 1 réponse | 0

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Question

Error or bug in SimBiology: creating custom kinetic laws.
I am building a model that requires a user defined kinetic law. My code: Mobj = sbiomodel('u_PA_parameter_generation'); %...

presque 10 ans il y a | 1 réponse | 0

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Question

How to use the 'exist' function for a SimBiology built-in function?
SimBiology has a kinetic law built-in called 'MassAction'. I want to use 'exists' to detect whether it is in there or not (then ...

presque 10 ans il y a | 2 réponses | 0

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Réponse apportée
How to view differential equations produced by SimBiology?
You can use the GUI to export model equations.

presque 10 ans il y a | 1

| A accepté

Question

How to view differential equations produced by SimBiology?
I am reproducing a published model and need to view the differential equations produced by the SimBiology functions. I am using ...

presque 10 ans il y a | 2 réponses | 1

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réponses

Réponse apportée
Find the steady states of a system.
Basically the answer was to initialize the figure before the for loop

presque 10 ans il y a | 0

| A accepté

Question

Find the steady states of a system.
I am building a SimBiology Model. I want to simulate from randomly generated initial conditions numerous times and find the stea...

presque 10 ans il y a | 2 réponses | 0

2

réponses

Question

Synax for species generation in SimBiology.
In other modelling software I can simple use: ' -> protein' for fist order production of a protein however this doesn't s...

presque 10 ans il y a | 1 réponse | 0

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réponse

Question

Plotting multiple graphs which are generated in loops on a single figure
I have the following code: antibodies = {'Rel-A','p-Rel-A','IkBa','p-IkBa','A20'}; x_axis = {'PBS','GOX','TNF','L...

plus de 10 ans il y a | 1 réponse | 0

1

réponse