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Cluster with 8 workers runs only one job at a time

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Stephen
Stephen le 18 Juin 2014
Commenté : Stephen le 19 Juin 2014
I am using a local cluster (parcluster) to run 6 jobs. When I examine my cluster, I see that it reports 8 workers. Since I'm submitting the 6 jobs simulataneously, I would expect that all six would start running right away. Instead, the jobs are only executed one at a time with the others remaining in a 'queued' state. Is there a way to run more than one job at a time, or (best case) run all jobs simultaneously?
  2 commentaires
Edric Ellis
Edric Ellis le 18 Juin 2014
How are you submitting these jobs? I just tried this using the BATCH command, and saw this:
>> c = parcluster('local');
>> for idx = 1:6, batch(c, 'pause(10)'); end
>> c.Jobs
ans =
6x1 Job array:
ID Type State FinishTime Username Tasks
------------------------------------------------------------------
1 1 independent running eellis 1
2 2 independent running eellis 1
3 3 independent running eellis 1
4 4 independent running eellis 1
5 5 independent running eellis 1
6 6 independent running eellis 1
Stephen
Stephen le 18 Juin 2014
The jobs are submitted as a group of 20 tasks using createTask, as follows:
myCluster = parcluster;
for i = 1:6
workerTable{i,1} = createJob(myCluster);
for j = 1:20
createTask(workerTable{i,1},@lengthyFxn,7,{inputArgs});
end
submit(workerTable{i,1});
end

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Sean de Wolski
Sean de Wolski le 18 Juin 2014
The tasks are not running serially as you expect but are running in parallel and are thus using all of the resources available. This is why the next job has to wait until the previous has finished running all of its tasks.
  3 commentaires
Sean de Wolski
Sean de Wolski le 18 Juin 2014
Yes.
Stephen
Stephen le 19 Juin 2014
How could I increase the number of workers in the parpool? Would increasing the number of workers help the background processes to finish sooner or is that capped by system resources?

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