Index exceeds the number of array elements.

Please let me know a solution for the error. Data attached here.

Index exceeds the number of array elements. Index must not exceed 1.

Error in analyzeHFIRdatad0 (line 36)

theta2 = h5read(fname,sprintf('%s/2theta',info.Groups(5).Name));

i=0;

for fna= 2506:2507
fname=sprintf('HB2B_%d.nxs.h5',fna);
i=i+1;

NumPeaks=1;
NumTrials=15;%the higher the number, the better the fit is (but slower), typical value: 10
BaselineMode=1;%0 no baseline, 1 linear, 2 quadratic, 3 flat(not working yet)
peakshape=33;%Ps. Voigt
window=8e-12;% center +/- (window/2) corresponds to the fitting window
center=1.09e-10; 

fwhm=1; start=[center fwhm];%first guess (ignore=0)
fixedparameters=[peakshape start(1) start(2)];%specifies fixed peakshape, pos, width (ignore=0)
plots=1;%plot for each peakfit
extra=1;%all peaks with same shape: use extra=1

%% Code starts

info = h5info(fname);
theta2 = h5read(fname,sprintf('%s/2theta',info.Groups(5).Name));
counts = h5read(fname,sprintf('%s/main',info.Groups(5).Name));
wave=h5read(fname,'/instrument/monochromator setting/wave length')*1e-10;
d=wave./(2.*sin(theta2./2*pi/180));

signal=[d,counts];%d-spacing

[results,resultserr]=peakfit(signal,center,window,NumPeaks,peakshape,extra, NumTrials, start, BaselineMode,fixedparameters,plots);
pos(i)=results(1,2); int(i)=results(1,3); 
w(i)=results(1,4); area(i)=results(1,5); 
err(i)=resultserr(1); r2(i)=resultserr(2);

end

d0=mean(pos)
dlmwrite('d0.csv',d0,'precision',10)

Answer 1

[Walter Roberson]

I can find 2theta as /entry/DASlogs/2theta but there is no main anywhere in the dataset.

I can find /entry/instrument but there is no monochromator setting anywhere in the dataset.

[MS]

Okay , thanks. I notticed the missing data