how to change the image from axial to sagittal

Dear All

I have Image as you can download from link here (https://drive.google.com/file/d/1UWWDY07p4QJKOhkTj-CSe4tZcU8cjmeV/view?usp=sharing).

But when I evelaute my coding, the image show as axial view. Anyone know how to change it into sagittal view?

clc
clear all
close all
sz = [128 128 128];
fname = 'jaszak166_dew_w2.h00_it4.img';
fid = fopen(fname);
data = fread(fid,'*float'); % assuming uint
fclose(fid);
% this is blindly devectorized 
% may still be transposed, but i can't tell due to symmetry
% note that data is binarized on a [0 1000] scale in uint16
% so if viewing in a denormalized manner, it'll just appear black
% normalize or rescale it as needed
data = reshape(data,sz); 
imtool3D(data)

[Vinay]

Hi @mohd akmal masud, the drive link is not accessible. Could you please share the image in the comments section instead?

[mohd akmal masud]

Dear @Vinay, here you go https://drive.google.com/file/d/10EUsydCVzIYAaQMXOvzzg4K9L6nw6SLc/view?usp=sharing

Answer 1

[Matt J]

imtool3D() is not a native Matlab function, but I imagine if you permute your data permute(data,[3,1,2]) so that its slices are sagittally aligned, it will display the way you wish.

[mohd akmal masud]

Thank you @Matt J, its wotk

[Matt J]

I'm glad, but please Accept-click the answer to indicate so.

[mohd akmal masud]

Done Sir

[mohd akmal masud]

Dear @Matt J,

I tries to convert it into .dcm but failed.

clc
clear all
close all
sz = [128 128 128];
fname = 'nemay90_sca_w1.h00_it4.img';
fid = fopen(fname);
data = fread(fid,'*float'); % assuming uint
fclose(fid);
% this is blindly devectorized 
% may still be transposed, but i can't tell due to symmetry
% note that data is binarized on a [0 1000] scale in uint16
% so if viewing in a denormalized manner, it'll just appear black
% normalize or rescale it as needed
data = reshape(data,sz); 
data1 = im2uint16(data);
data2 = permute(data1,[3,1,2]);
dicomwrite(data2,'NEWDATA.dcm','CreateMode', 'copy');

ERROR

Error using dicom_copy_IOD>getIOD

Missing required attribute (0008,0016) "SOPClassUID"

Error in dicom_copy_IOD (line 26)

IOD_UID = getIOD(metadata, options, dictionary);

Error in dicomwrite>write_message (line 97)

[attrs, status] = dicom_copy_IOD(X, map, ...

Error in dicomwrite (line 28)

[mohd akmal masud]

Dear @Matt J

the images can get https://drive.google.com/file/d/10EUsydCVzIYAaQMXOvzzg4K9L6nw6SLc/view?usp=sharing

[Matt J]

Writing to dicom is a tricky thing, but also seems unnecessary for the purposes of your posted question. imtool3D doesn't need its input in DICOM form.