It is showing error in the program command window

I am showing that error in the following in red color

Conversion to logical from matlab.graphics.chart.primitive.Line is not possible.

Error in CleanData/CloseCleanedData (line 97) if pl(j)

Error using uiwait (line 81) Error while evaluating Figure CloseRequestFcn

[Walter Roberson]

We need to see your code.

Answer 1

[VIJAY KUMAR]

clearvars -except faceMapsSave5 faceMapsSave7 faceMapsSave9;
% close all;
pathSetup();

Partition is preferably set the main folder on the drive used.

 %partition = 'C:\Data\Users\Alexander\Movies\Besira\November 27\';
partition = 'C:\Data\Users\Alexander\Movies\Besira\';
[fileName, filePath] = uigetfile([partition '*.mat'],'Choose file');

stepperData = load([filePath '..\cam_' fileName(6:end-4) '.txt']);

bsIndex = find(filePath == '\' | filePath == '/');
saveName = filePath(bsIndex(end-3)+1:bsIndex(end-1)-1);
bsIndex = find(saveName =='\' | saveName == '/');
saveName(bsIndex) = '_';
saveName(saveName == '%') = 'p'; % Can't save as .pdf with '%' in file name.
saveName(saveName == ' ') = '_';

%%Error calc option
errorbars = 0; % errorbar = 0 draws two lines with 1 resp std:s
compensateErrorForWidth = 1;
closeAllWindows = 0; %Closes all plots when closing one, good to use when resaving plots

%%Name saved figures and data
savePathData = 'C:\Data\Users\Alexander\Movies\SavedPlotsAndData\data\';
savePathPlot = 'C:\Data\Users\Alexander\Movies\SavedPlotsAndData\plots\';
savePathAnnot= 'C:\Data\Users\Alexander\Movies\SavedPlotsAndData\annotations\';
savePathRod = 'C:\Data\Users\Alexander\Movies\SavedPlotsAndData\rods\';

%%replot all data in data folder
% files = dir([savePathData '*.mat']);
% nrOfFiles = length(files);
% errorFiles = {};
% %%
% for i = 1:nrOfFiles
%     saveName = files(i).name(1:end-4);
if ~exist('faceMapsSave5','var')
    faceMapsSave5 = load('FaceMapsLambda5.mat');
    faceMapsSave5 = faceMapsSave5.L5;

      faceMapsSave7 = load('FaceMapsLambda7.mat');
      faceMapsSave7 = faceMapsSave7.L7;

      faceMapsSave9 = load('FaceMapsLambda9.mat');
      faceMapsSave9 = faceMapsSave9.L9;
  end
  facemaps = {faceMapsSave5,faceMapsSave7,faceMapsSave9};
    if  exist([savePathData saveName '.mat'],'file')
        fuss = load([savePathData saveName '.mat']);
        saveStruct = fuss.saveStruct;
        saveStruct.saveName = saveName;

           lambda = saveStruct.rodLength/3; %3 is the diameter of the rod
           [~,bestMatchLambda] = min(abs([5 7 9] - lambda));
  %         
           facemapMatch = facemaps{bestMatchLambda};
           saveStruct.bestMatchLambda = bestMatchLambda;
           saveStruct = FitExpToTheory(saveStruct,facemapMatch, 1);
           save([savePathData saveName '.mat'],'saveStruct')
      else
          %%Load data
          fuss = load([filePath fileName]);
          data = fuss.data;
          extraData =fuss.extraData;
          currentRange = [1, length(data(:,1))];
          loadedStruct = extractData(data,extraData,currentRange,0,1,compensateErrorForWidth);
          loadedStruct2 = extractData(data,extraData,currentRange,0,0,compensateErrorForWidth);
          frames = load([filePath 'frames.mat']);

          %%Data needed from the extracted data
          saveStruct = struct();
          saveStruct.n_x = loadedStruct.n_x;
          saveStruct.n_z = loadedStruct.n_z;
          saveStruct.XDistanceCons = loadedStruct.XDistance;
          saveStruct.XDistance = loadedStruct2.XDistance;
          saveStruct.XFrames = loadedStruct.XFrames;
          saveStruct.stretchData = extraData.stretchData;
          saveStruct.flowAngle = extraData.FlowAngle;
          saveStruct.P_M_Start = mean(extraData.x);
          temp = stepperData(1,3)*1e-3;
          saveStruct.X0 = stepperData(1,2)*1e-3;
          saveStruct.Y0 = temp - saveStruct.flowAngle*saveStruct.X0; 
          saveStruct.rodLength = loadedStruct.rodLength;
          saveStruct.frames = frames;
          saveStruct.saveName = saveName;
          saveStruct.YPos = loadedStruct.YPos;
          saveStruct.XTime = loadedStruct.XTime;
          saveStruct.a = loadedStruct.a;
          saveStruct.b = loadedStruct.b;
          saveStruct.loadedStruct = loadedStruct;
          saveStruct.saved = 0;

          lambda = saveStruct.rodLength/3; %3 is the diameter of the rod
          [~,bestMatchLambda] = min(abs([5 7 9] - lambda));

          facemapMatch = facemaps{bestMatchLambda};
          saveStruct.bestMatchLambda = bestMatchLambda;

          %Exstract, structure and clean data
          saveStruct = SortOutData(saveStruct);

          %Pair stretches for reversals
  %         saveStruct = PairStretches(saveStruct);

          %Select a picture of the particle
          saveStruct = SelectFrame(frames,saveStruct);

          % Find Nx = 0
          indices = FindNx0(saveStruct.stretchesNX); 
          saveStruct = FindDeltaNz(indices,saveStruct); %First collumn nz, 2nd deltaNz
          saveStruct = FloatOrSink(indices,saveStruct);

           %Fit values to a theoretical orbit
         saveStruct = FitExpToTheory(saveStruct,facemapMatch,1);

          saveStruct = ErrorTest(saveStruct,compensateErrorForWidth);
          save([savePathData saveName '.mat'],'saveStruct')
      end
      try
  %         indices = FindNx0(saveStruct.stretchesNX); 
  %         saveStruct = FindDeltaNz(indices,saveStruct); %First collumn nz, 2nd deltaNz
  %         saveStruct = FloatOrSink(indices,saveStruct);

          fuss = load([filePath fileName]);
          data = fuss.data;
          extraData =fuss.extraData;
          currentRange = [1, length(data(:,1))];
          loadedStruct = extractData(data,extraData,currentRange,0,1,compensateErrorForWidth);
          loadedStruct2 = extractData(data,extraData,currentRange,0,0,compensateErrorForWidth);
          temp = stepperData(1,3)*1e-3;
          saveStruct.X0 = stepperData(1,2)*1e-3;
          saveStruct.Y0 = temp - saveStruct.flowAngle*saveStruct.X0;   

          saveStruct = ErrorTest(saveStruct,compensateErrorForWidth);
          save([savePathData saveName '.mat'],'saveStruct')

         [saveStruct, stretches, rod, turns, drift, velocity] = PlotTrajectories(saveStruct,closeAllWindows,errorbars);
         save([savePathData saveName '.mat'],'saveStruct')
  %        PlotOrbit(saveStruct,facemapMatch);
      catch err
  %         errorFiles = [errorFiles saveName];
          rethrow(err)
  %         continue
      end

      saveStruct.saved = 0;
      if saveStruct.saved == 0
          savefig([savePathPlot saveName '_A'],stretches,'pdf')
          savefig([savePathPlot saveName '_B'],drift,'pdf')
          for i = 1:length(turns)
              nrFix = '';
              if i < 10
                  nrFix = '0';  
              end
              savefig([savePathPlot saveName '_C' nrFix num2str(i)],turns(i),'pdf')
          end 
          savefig([savePathPlot saveName '_D'],velocity,'pdf')
  %         savefig([savePathPlot saveName '_E'],orbit,'pdf')
  %         for i = 1:length(theoryStretches)
  %            nrFix = '';
  %             if i < 10
  %                 nrFix = '0';  
  %             end
  %             savefig([savePathPlot saveName '_E' nrFix num2str(i)],theoryStretches(i),'pdf') 
  %         end
          savefig([savePathRod saveName],rod,'pdf')

%         % Save the annotations  
%         fid = fopen([savePathAnnot, saveName, 'annotations.tex'],'w');
%         fprintf(fid,'\\caption{' , 'uchar');
%         fprintf(fid, ['$\\lambda$ = ', num2str(saveStruct.rodLength/3), '\n'], 'uchar'); %write data
%         fprintf(fid, ['$ x_0 = ', num2str(round(saveStruct.X0*1000)), ' \\mu m, z_0 = ', num2str(round(saveStruct.Y0*1000)) ,'\\mu m$']);
%         fprintf(fid, ['Depth approx ' num2str(saveStruct.depth), '$\\mu$ m']);
%         for i=1:length(saveStruct.annots)
%             fprintf(fid, saveStruct.annots{i}, 'uchar'); %write data
%         end
%         fprintf(fid, '}', 'uchar');
%         fclose(fid);
        saveStruct.saved = 1;
    end
    disp(saveName);
%     close all
%    saveStruct =  FitValuesToFacemap(saveStruct);
    save([savePathData saveName '.mat'],'saveStruct')
% end

[Walter Roberson]

CleanData is not present in that code.