non-linear dimension reduction via Autoencoder

hello all, I am trying to use the Matlab implementation of autoencoder to reduce the dimension of 1509 samples of Bag-of-visual word models of images, but I am surprised that while the image classification without dimension reduction recorded about 50% accuracy, and Matlab's PCA improved it to 60% but the Matlab implementation of autoencoder (with logsig activation and default values for all the parameters) reduced it to 40%. I expect higher accuracy from autoencoder, what can be the problem?

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