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How to read vsi image format into matlab

20 vues (au cours des 30 derniers jours)
Peyman Obeidy
Peyman Obeidy le 16 Oct 2017
Commenté : Walter Roberson le 17 Oct 2017
Any idea about how to read vsi image format into matlab and convert it into tif?

Réponses (2)

KSSV
KSSV le 16 Oct 2017

Walter Roberson
Walter Roberson le 16 Oct 2017
There is no obvious available MATLAB source for that. The virtual protocols are not documented in any obvious place -- and if they were then it would probably not matter as you appear to be running some weird standalone system.
When I look at https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=1244&start=10 it appears to me that there is Java software named 'Fiji' that might be able to handle some of the protocols. If it is still available then it could probably be called from MATLAB. Which might or might not be useful on your weird standalone system.
  3 commentaires
Peyman Obeidy
Peyman Obeidy le 17 Oct 2017
Dear Walter,
I thought that you might be interested in this: The bio-formats implemented in MATLAB apparently you can open the VSI file with it.
https://downloads.openmicroscopy.org/bio-formats/5.1.10/
Walter Roberson
Walter Roberson le 17 Oct 2017
That looks like it is potentially useful.

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