Saving variables as .mat or xls files without overwriting them with every iteration of a loop
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I have written a script that loops through 15 datasets. I want to save some variables as mat files or xls files without them being overwritten on every iteration.
Any tips?
%[ALLEEG EEG CURRENTSET ALLCOM] = eeglab;
for i = 1:15
name = ['sub', num2str(i), '.set'];
EEG = pop_loadset('filename',name,'filepath','C:\\kristin\\EXAM2\\EEGrawData\\');
%% RECODING TRIGGERS
EEG = recodingTriggers(EEG);
%This function recodes the triggers into the following categories;
%correctGo, incorrectGo, falseAlarm, correctStop;
%% FILTERING
%For now, I am using the Matlab function movmean(A, k, dim) to run a
%three-point average filtering of the data. k = width of points to average.
%
EEG.data = movmean(EEG.data,3,2);
%% RE-REFERENCING;
commonAvgRef = mean(EEG.data);
EEG.data = bsxfun(@minus, EEG.data, commonAvgRef);
% Here, I first compute the average value of all electrodes, simply by computing the mean of each
% column accross the rows in the EEG.data file. Then i subtracted the vector containing
%common average reference from each corresponding column in the EEG.data matrix.
%% EPOCHING
run epochingData.m
run RTs.m
%% BASELINE CORRECTION
epochs_CG = baselineCorr(epochs_CG, -200);
epochs_CS = baselineCorr(epochs_CS, -200);
epochs_FA = baselineCorr(epochs_FA, -200);
%% ARTIFACT REJECTION
run artifactRejection.m
%% EXTRACTING ERPs
ERP_CG = mean(epochs_CG,3);
ERP_CS = mean(epochs_CS,3);
ERP_FA = mean(epochs_FA,3);
%% extracting and saving mean RTs
meanRT_CG = mean(RT_CG);
meanRT_CS = mean(RT_CS);
meanRT_FA = mean(RT_FA);
meanRT_CG = array2table(meanRT_CG);
meanRT_CS = array2table(meanRT_CS);
meanRT_FA = array2table(meanRT_FA);
writetable(meanRT_CG, 'meanRT_CS.xls'
writetable(meanRT_CS, 'meanRT_CS.xls');
writetable(meanRT_FA, 'meanRT_FA.xls');
%% Writing output
% ???
clear all
clc
end
I want to save the variables epochs_CG, epochs_FA and epochsCS (3D matrices) as separate mat files for each iteration, and the RTs as xls files. The xls files are saved, but overwritten on each iteration. Any tips?
8 commentaires
Adam Danz
le 23 Mar 2019
Oops, I should have enclosed the variable names in single quotes in my examples. I'll edit it now.
Réponse acceptée
Adam Danz
le 23 Mar 2019
(continued from comments section above).
% Create an anonymous function that creates filenames
% s is the name of the file; example: 'meanRT_CS'
% d is the iteration number (integer)
% e is the file extension without the dot; example: xls
fnameFcn = @(s,d,e)sprintf('%s_%d.%s', s,d,e);
for i = 1:15
% Save mat files (but why not save all vars to same
save(fnameFcn('epochs_CS',i,'mat'), 'epochs_CS')
save(fnameFcn('epochs_FA ',i,'mat'), 'epochs_FA')
save(fnameFcn('epochs_CG ',i,'mat'), 'epochs_CG')
% Save xls files
writetable(meanRT_CG, fnameFcn('meanRT_CG',i,'xls'))
writetable(meanRT_CS, fnameFcn('meanRT_CS',i,'xls'))
writetable(meanRT_FA, fnameFcn('meanRT_FA',i,'xls'))
end
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