How to quickly find the first non-zero element without iterations in all columns in a sparse matrix?

119 vues (au cours des 30 derniers jours)
Hi, All,
I have a big sparse matrix A. I want to find out the first non-zero element in all columns from the top. Here is my code:
reorderCol = [];
for jCol = 1 : length(A(1,:))
eee = find(A(:,jCol),1,'first');
reorderCol = [reorderCol eee];
end
For example, I have matrix A = [0 0 0;0 5 0;0 0 1;0 0 0;-1 0 -4]. My code gives the following result:
reorderCol = [5 2 3];
I am wondering if it is possible to obtain reorderCol without iterations. Thanks a lot.
Benson

Réponse acceptée

Matt J
Matt J le 19 Mar 2020
[~,result]=max(logical(A),[],1);
  3 commentaires
Benson Gou
Benson Gou le 19 Mar 2020
Hi, Matt,
Do you think I can use your code to do the same thing for the rows in a sparse matrix? I want to find the index of the LAST non-zero element in each row in A.
For example, I have matrix A = [2 0 0;0 5 0;0 0 1;0 3 0;-1 0 -4]. My code gives the following result:
reorderRow = [1 2 3 2 3];
Thanks a lot.
Benson

Connectez-vous pour commenter.

Plus de réponses (3)

KSSV
KSSV le 18 Mar 2020
[val,id] = min(abs(A)) ;
Use the minimum function.
  1 commentaire
Benson Gou
Benson Gou le 18 Mar 2020
Hi, KSSV, thanks for your reply. I am sorry for the unclarity of my statement. I am looking for the position of the first non-zero element in each column, not the value of the first non-zero element. Thanks!
Benson

Connectez-vous pour commenter.


Les Beckham
Les Beckham le 18 Mar 2020
Modifié(e) : Les Beckham le 18 Mar 2020
Try this. In my test with a 1000x1000 random sparse 0 or 1 matrix (A = sparse(randi([0 1], 1000, 1000));) it is about 4 times faster.
i = find(A(:) ~= 0, 1, 'first');
ij = ind2sub(size(A), i);
For a 5000x5000 A it is actually slower, however (about 83% as fast).
Note that I am using Octave as I don't currently have access to Matlab.
Iteration is not always necessary, or desirable, to avoid. In fact, many of the Matlab 'tricks' are just iteration in disguise.
I hope this helps.
Perhaps your results will be different using Matlab vs. Octave. Let me know.
  1 commentaire
Benson Gou
Benson Gou le 19 Mar 2020
Hi, Les,
I tried your code. I found it only gives me one integer which is the first non-zero lement in the first column in A. How can I apply for all the columns in A? Thanks.
Benson

Connectez-vous pour commenter.


Matt J
Matt J le 19 Mar 2020

Catégories

En savoir plus sur Genomics and Next Generation Sequencing dans Help Center et File Exchange

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by