CyAn

Cyanobacteria Image Analysis Toolbox

CyAn: A Cyanobacteria Image Analysis Toolbox

Welcome to CyAn, a MATLAB toolbox for analysis of cyanobacteria images and resulting data.

Features

• Segmentation of cyanobacteria in images
• Segmentation of spots (chromosomes, carboxysomes) in cells
• Data analysis tools, e.g. plotting lineage trees

Installation and Usage

To use this toolbox, download the latest release. You do not need to download this repository. For more information, please see the Getting Started guide.

Contribute

Bug reports and feature requests

Please use the Issue Tracker to file a bug report or to request new features.

Source code

• The source code can be cloned from this repository

git clone [e-mail]:Biofrontiers-ALMC/CyAn.git

• Read the Developer's Guide
• The directory of the Git repository is arranged according to the best practices described in this MathWorks blog post.