imread for multiple life science image file formats

imports images and metadata using the LOCI Bioformats package

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Detailed tutorial of imreadBF:

http://imageprocessingblog.com/importing-generic-bioimage-files-to-matlab/

Imports formats from Zeiss, Leica, Nikon, Olympus, MetaMorph and others via BioFormats

Amongst others, following formats are supported:
lsm, zvi, ics, nd2, pic, dv, img, tif,

imreadBF loads multiple user-defined image slices at once.
[imageStack]=imreadBF(datname,zplanes,tframes,channel)

You can load multiple z and t slices at once, e.g. zplanes=[1 2 5] loads first,second and fifth z-slice in a 3D-Stack.

imreadBFmeta returns corresponding metadata.

To use the functions, you have to download loci_tools.jar here: http://www.loci.wisc.edu/bio-formats/downloads

make sure to have copied the file loci_tools.jar, in the folder where the
function is placed

modified from bfopen.m

More information about BioFormats:
http://www.loci.wisc.edu/software/bio-formats

Citation pour cette source

Christoph Moehl (2026). imread for multiple life science image file formats (https://fr.mathworks.com/matlabcentral/fileexchange/32920-imread-for-multiple-life-science-image-file-formats), MATLAB Central File Exchange. Extrait(e) le .

Informations générales

Compatibilité avec les versions de MATLAB

  • Compatible avec toutes les versions

Plateformes compatibles

  • Windows
  • macOS
  • Linux
Version Publié le Notes de version Action
1.7.0.0

added link to tutorial on image processing blog

1.6.0.0

updated metadata import

1.2.0.0

files were completed

1.1.0.0

path of loci_tools.jar is now added automatically (code was copied from bfopen.m)

1.0.0.0