Liposome Analysis

Analyses grayscale images of liposomes, and produces different size and shape parameters.

This function analyses grayscale '.tif' images of liposomes (or any round shaped particles).
This function applies to the image:
1. Histogram Equalization.
2. Low Pass Filter (variable size, default size 12).
3. Illumination Equalization (default size 120).
4. Thresholding (user input).
5. Removing Edge Particles (user input).
6. Removing Edge Particles (by size, user input).
7. High Pass Filter (default size 3).
8. Size Analysis. Default: 'Orientation', 'MinorAxisLength', 'MajorAxisLength', 'Centroid', 'Area'.
9. Final artifact removal (user input).
The output is a '.txt' file with a table containing all the parameters.
An example is provided with the code.
http://www.orenregev.com/