Script package for quantifying bacterial load within cells using images from an ArrayScan microscope


Updated 20 Feb 2017

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This package includes a variety of scripts for analysis of microscopy images, using the SAFIRE screening platform. This package is useful for analyzing high-content screens of intracellular bacteria. The package inputs images from an ArrayScan microscopy, segments host cells, and quantifies intracellular bacteria. It applies B-score normalization to the resulting data.

Cite As

Abigail Reens (2023). SAFIRE_ArrayScan (, MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2016b
Compatible with any release
Platform Compatibility
Windows macOS Linux
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