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484 Downloads
Updated 22 Jul 2022
From GitHub
Version History
| 1.07 | See release notes for this release on GitHub: https://github.com/benfulcher/hctsa/releases/tag/v1.07 |
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| 1.06 | See release notes for this release on GitHub: https://github.com/benfulcher/hctsa/releases/tag/v1.06 |
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| 1.05 | See release notes for this release on GitHub: https://github.com/benfulcher/hctsa/releases/tag/v1.05 |
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| 1.04 |
Software for performing highly comparative time-series analysis in Matlab. Contains code for extracting over 7000 features from a given time series, and functions for visualizing and analyzing the results across a time-series dataset.
Cite As
Fulcher, Ben, et al. Benfulcher/Hctsa: v1.04. Zenodo, 2020, doi:10.5281/ZENODO.3955668.
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| MLA |
Fulcher, Ben, et al. Benfulcher/Hctsa: v1.04. Zenodo, 2020, doi:10.5281/ZENODO.3955668.
|
| APA |
Fulcher, B., Cliff, O., Harris, B., Philiphorst, Sethi, S., Lubba, C. H., Alam, I., et al. (2020). benfulcher/hctsa: v1.04. Zenodo. Retrieved from https://zenodo.org/record/3955668
|
| BibTeX |
@misc{https://doi.org/10.5281/zenodo.3955668,
doi = {10.5281/ZENODO.3955668},
url = {https://zenodo.org/record/3955668},
author = {Fulcher, Ben and Cliff, Oliver and Harris, Brendan and {Philiphorst} and Sethi, Sarab and Lubba, Carl H and Alam, Imran and {, Lukas} and Vysyaraju, Krishna Prajeeth and McCormac, James and Pandramish, Vinay and {Haohua Li}},
title = {benfulcher/hctsa: v1.04},
publisher = {Zenodo},
year = {2020},
copyright = {Open Access}
}
|
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Calculation
- sample_runscript_matlab
- sample_runscript_sql.m
- SQL_Retrieve
- SQL_Store
- TS_CalculateFeatureVector
- TS_CheckTimeSeries
- TS_Combine
- TS_Compute
- TS_ComputeMasterLoop
- TS_ComputeOpLoop
- TS_Init
- TS_LinkOperationsWithMasters
- TS_WhichProblemTS
Database
- install_database.m
- install_jconnector
- mysql_dbexecute
- mysql_dbopen
- mysql_dbquery
- SQL_Add
- SQL_AddChunked
- SQL_ChangeDatabase
- SQL_ClearRemove
- SQL_CloseDatabase
- SQL_CreateAllTables
- SQL_CreateDatabase
- SQL_FlushKeywords
- SQL_GetIDs
- SQL_GiveMeCode
- SQL_OpenDatabase
- SQL_Reset
- SQL_ShowConnSettings
- SQL_TableCreateString
FeatureSets
Operations
- CO_AddNoise
- CO_AutoCorr
- CO_AutoCorrShape
- CO_CompareMinAMI
- CO_Embed2
- CO_Embed2_AngleTau
- CO_Embed2_Basic
- CO_Embed2_Dist
- CO_Embed2_Shapes
- CO_FirstCrossing
- CO_FirstMin
- CO_fzcglscf
- CO_glscf
- CO_HistogramAMI
- CO_NonlinearAutocorr
- CO_RM_AMInformation
- CO_StickAngles
- CO_tc3
- CO_TranslateShape
- CO_trev
- CO_TSTL_amutual
- CP_l1pwc_sweep_lambda
- CP_ML_StepDetect
- CP_wavelet_varchg
- DN_Burstiness
- DN_CompareKSFit
- DN_Cumulants
- DN_CustomSkewness
- DN_cv
- DN_FitKernelSmooth
- DN_Fit_mle
- DN_HighLowMu
- DN_HistogramAsymmetry
- DN_HistogramMode
- DN_Mean
- DN_MinMax
- DN_Moments
- DN_nlogL_norm
- DN_OutlierInclude
- DN_OutlierTest
- DN_pleft
- DN_ProportionValues
- DN_Quantile
- DN_RemovePoints
- DN_SimpleFit
- DN_Spread
- DN_TrimmedMean
- DN_Unique
- DN_Withinp
- DT_IsSeasonal
- EN_ApEn
- EN_CID
- EN_DistributionEntropy
- EN_mse
- EN_MS_LZcomplexity
- EN_MS_shannon
- EN_PermEn
- EN_Randomize
- EN_RM_entropy
- EN_rpde
- EN_SampEn
- EN_wentropy
- EX_MovingThreshold
- FC_LocalSimple
- FC_LoopLocalSimple
- FC_Surprise
- HT_DistributionTest
- HT_HypothesisTest
- IN_AutoMutualInfo
- IN_AutoMutualInfoStats
- IN_Initialize_MI
- IN_MutualInfo
- MD_hrv_classic
- MD_pNN
- MD_polvar
- MD_rawHRVmeas
- MF_arfit
- MF_armax
- MF_ARMA_orders
- MF_AR_arcov
- MF_CompareAR
- MF_CompareTestSets
- MF_ExpSmoothing
- MF_FitSubsegments
- MF_GARCHcompare
- MF_GARCHfit
- MF_GP_FitAcross
- MF_GP_hyperparameters
- MF_GP_LearnHyperp
- MF_GP_LocalPrediction
- MF_hmm_CompareNStates
- MF_hmm_fit
- MF_ResidualAnalysis
- MF_StateSpaceCompOrder
- MF_StateSpace_n4sid
- MF_steps_ahead
- NL_BoxCorrDim
- NL_CaosMethod
- NL_crptool_fnn
- NL_DVV
- NL_embed_PCA
- NL_MS_fnn
- NL_MS_nlpe
- NL_nsamdf
- NL_TISEAN_c1
- NL_TISEAN_d2
- NL_TISEAN_fnn
- NL_TSTL_acp
- NL_TSTL_dimensions
- NL_TSTL_FractalDimensions
- NL_TSTL_GPCorrSum
- NL_TSTL_LargestLyap
- NL_TSTL_PoincareSection
- NL_TSTL_ReturnTime
- NL_TSTL_TakensEstimator
- NW_VisibilityGraph
- PD_PeriodicityWang
- PH_ForcePotential
- PH_Walker
- PP_Compare
- PP_Iterate
- PP_ModelFit
- PP_PreProcess
- SB_BinaryStats
- SB_BinaryStretch
- SB_CoarseGrain
- SB_MotifThree
- SB_MotifTwo
- SB_TransitionMatrix
- SB_TransitionpAlphabet
- SC_fastdfa
- SC_FluctAnal
- SC_MMA
- SD_MakeSurrogates
- SD_SurrogateTest
- SD_TSTL_surrogates
- SP_Summaries
- ST_FitPolynomial
- ST_Length
- ST_LocalExtrema
- ST_MomentCorr
- ST_SimpleStats
- SY_DriftingMean
- SY_DynWin
- SY_KPSStest
- SY_LocalDistributions
- SY_LocalGlobal
- SY_PPtest
- SY_RangeEvolve
- SY_SlidingWindow
- SY_SpreadRandomLocal
- SY_StatAv
- SY_StdNthDer
- SY_StdNthDerChange
- SY_TISEAN_nstat_z
- SY_Trend
- SY_VarRatioTest
- TSTL_delaytime
- TSTL_localdensity
- TSTL_predict
- WL_coeffs
- WL_cwt
- WL_DetailCoeffs
- WL_dwtcoeff
- WL_fBM
- WL_scal2frq
PeripheryFunctions
- AddJavaClassPathInfoDynamics
- BF_AnnotatePoints
- BF_AnnotateRect
- BF_Binarize
- BF_Binarize
- BF_cat
- BF_cell2cellcell
- BF_CheckToolbox
- BF_ClosestPoint_ginput
- BF_ClusterDown
- BF_ClusterReorder
- BF_Embed
- BF_GetColorMap
- BF_GiveMeField
- BF_iszscored
- BF_LinkageOrdering
- BF_LossFunction
- BF_LowDimProject
- BF_MakeBrightenedColorMap
- BF_MakeBuffer
- BF_MutualInfDist
- BF_MutualInformation
- BF_NaNCov
- BF_NormalizeMatrix
- BF_ParEval
- BF_pdist
- BF_PlotCorrMat
- BF_plot_ks
- BF_PointOfCrossing
- BF_PreProcess
- BF_ProgressBar
- BF_RemoveNaN_DistMat
- BF_ResetSeed
- BF_SignChange
- BF_SimpleBinner
- BF_TheTime
- BF_ToGroup
- BF_ViolinPlot
- BF_Whiten
- BF_WriteTempFile
- BF_zscore
- ComputeCVAccuracies
- FilterFeatures
- FilterLabeledTimeSeries
- GiveMeCfn
- GiveMeColors
- GiveMeDefaultClassificationParams
- GiveMeFunctionHandle
- GiveMeSimpleNullStats
- HowManyFolds
- InverseProbWeight
- LowDimDisplayTopLoadings
- MakeTableOfFunctions
- NetVis_Jtilda2d
- NetVis_netvis
- OutputToCSV
- RA_sqlescapestring
- SUB_cell2cellcell
- TellMeAboutClassification
- TellMeAboutLabeling
- TS_AddGitInfo
- TS_ConvertToTable
- TS_ExtractGroupLabels
- TS_FilterData
- TS_GetFromData
- TS_GetIDs
- TS_GiveMeFeatureSet
- TS_InitiateParallel
- TS_LoadData
- TS_LoadFeatures
- TS_LocalClearRemove
- TS_Predict
- TS_ReIndex
- TS_Subset
- TS_WhatKeywords
- UpdateClassifierText
PlottingAnalysis
- TS_Classify
- TS_ClassifyLowDim
- TS_Cluster
- TS_CompareFeatureSets
- TS_FeatureSummary
- TS_ForwardFS
- TS_InspectQuality
- TS_LabelGroups
- TS_LowDimInspect
- TS_Normalize
- TS_PairwiseDist
- TS_Plot2d
- TS_PlotDataMatrix
- TS_PlotLowDim
- TS_PlotTimeSeries
- TS_ReduceFeatureSet
- TS_SimSearch
- TS_SingleFeature
- TS_TopFeatures
Toolboxes
Toolboxes/ARFIT
Toolboxes/DVV_Toolbox
Toolboxes/Danny_Kaplan
Toolboxes/Marwan_crptool
Toolboxes/MatlabCentral
Toolboxes/Max_Little/fastdfa
Toolboxes/Max_Little/steps_bumps_toolkit
Toolboxes/Michael_Small
- MS_complexity
- MS_complexitybs.m
- MS_embed
- MS_firstzero
- MS_fnn
- MS_nearest.m
- MS_nearneigh
- MS_nlpe
- MS_rms
- MS_shannon.m
- MS_unfolding
Toolboxes/Misc
Toolboxes/OpenTSTOOL
Toolboxes/OpenTSTOOL/mex-dev
Toolboxes/OpenTSTOOL/mex-dev/Lyapunov
Toolboxes/OpenTSTOOL/mex-dev/NN/TestSuite
Toolboxes/OpenTSTOOL/mex-dev/Polynomauswahl
Toolboxes/OpenTSTOOL/tstoolbox/@achse
- achse
- cut
- delta
- display
- eq
- first
- horzcat
- label
- name
- quantity
- resolution
- samplerate
- scale
- setdelta
- setfirst
- setname
- setunit
- setvalues
- spacing
- unit
Toolboxes/OpenTSTOOL/tstoolbox/@core
- acf
- amutual
- compare
- core
- data
- db
- diff
- display
- dlens
- embed
- filterbank
- int
- intermutual
- isempty
- medianfilt
- minus
- minus
- mixed.m
- movav
- multires
- ndim
- norm1
- norm2
- rang
- rms
- scalogram
- spec
- spec2
- surrogate1
- surrogate1
- surrogate3
- uminus
- vertcat
Toolboxes/OpenTSTOOL/tstoolbox/@core/private
Toolboxes/OpenTSTOOL/tstoolbox/@description
- addcomment
- addhistory
- commandlines
- commandlines
- comment
- creator
- description
- display
- history
- label
- makescript
- merge
- name
- newcomment
- optparams
- plothint
- setlabel
- setname
- setoptparams
- setplothint
- settype
- setyname
- setyunit
- type
- yname
- yunit
Toolboxes/OpenTSTOOL/tstoolbox/@list
Toolboxes/OpenTSTOOL/tstoolbox/@signal
- abs
- acf
- acp
- amutual
- amutual2
- analyze
- aok
- arch
- boxdim
- cao
- ccf
- center
- corrdim
- corrsum
- corrsum
- crosscorrdim
- cut
- db
- delaytime
- diff
- dimensions
- display
- embed
- fft
- filterbank
- firstmax
- firstmin
- firstzero
- fracdims
- getaxis
- gmi
- histo
- infodim
- infodim2
- int
- intspikeint
- intspikeint
- largelyap
- level_adaption
- localdensity
- max
- medianfilt
- merge
- min
- minus
- mixed
- movav
- multires
- nearneigh
- norm1
- norm2
- pca
- plosivity
- plus
- poincare
- power
- predict2
- rang
- recurrence
- removeaxis
- return_time
- reverse
- rms
- scale
- scalogram
- setaxis
- setunit
- shift
- signal
- spacing
- spec
- spec2
- stts
- sttserror
- surrogate1
- surrogate2
- surrogate3
- surrogate_test
- surrtest
- swap
- takens_estimator
- tc3
- trend
- trev
- TSTOOLpredict
- upsample
- view
- write
Toolboxes/OpenTSTOOL/tstoolbox/@signal/private
Toolboxes/OpenTSTOOL/tstoolbox/@unit
- char
- dbref
- dbscale
- display
- double
- eq
- exponents
- factor
- label
- mpower
- mrdivide
- mtimes
- name
- quantity
- unit
Toolboxes/OpenTSTOOL/tstoolbox/@unit/private
Toolboxes/OpenTSTOOL/tstoolbox/demos
Toolboxes/OpenTSTOOL/tstoolbox/gui
Toolboxes/OpenTSTOOL/tstoolbox/gui/private
- cellsort
- eliminatedupl
- filllistbox
- getcurrentfile
- getlastentry
- hded1
- hded1
- inputdlg
- lclear
- linsert
- lload
- loadall
- loadallfiles
- loadhandles
- lremove
- lsort
- makedir
- newname
- readascii
- savesettings
- secfile
- setcurrentfile
- siglevel
- sinputdlg
- sortdatafiles
- tsplot
- writeascii
- writelevel
Toolboxes/OpenTSTOOL/tstoolbox/mex
- amutual.m
- baker.m
- boxcount.m
- cao.m
- chaosys.m
- corrsum.m
- corrsum2.m
- fnearneigh.m
- gendimest.m
- henon.m
- largelyap.m
- nn_prepare.m
- nn_search.m
- range_search.m
- return_times.m
- takens_estimator.m
- tentmap.m
- TSTOOLpredict.m
Toolboxes/OpenTSTOOL/tstoolbox/scripts
Toolboxes/OpenTSTOOL/tstoolbox/utils
- arch2
- gauss
- gen
- genbyode
- genbyode
- help_mex
- lorenz
- mixemb
- niceprint
- nnkscaling
- odesolver
- pauswahl
- randref
- sorteig
- tc3
- trev
- tsprint
- TSTL_pca
- tstoolInstall
- tstoolManual
- window
Toolboxes/Physionet
Toolboxes/Rudy_Moddemeijer
Toolboxes/ZG_hmm
Toolboxes/catch22
Toolboxes/gpml
Toolboxes/gpml/cov
- covADD
- covConst
- covCos
- covDiscrete
- covEye
- covFITC
- covGaborard
- covGaboriso
- covGrid
- covLIN
- covLINard
- covLINiso
- covLINone
- covMask
- covMaternard
- covMaterniso
- covNNone
- covNoise
- covPERard
- covPeriodic
- covPeriodicNoDC
- covPERiso
- covPoly
- covPPard
- covPPiso
- covPref
- covProd
- covRQard
- covRQiso
- covScale
- covSEard
- covSEfact
- covSEiso
- covSEisoU
- covSEvlen
- covSM
- covSum
Toolboxes/gpml/doc
- demoClassification.m
- demoGrid.m
- demoRegression.m
- gpml_randn
- usageClassification.m
- usageCov.m
- usageLik.m
- usageMean.m
- usagePrior.m
- usageRegression.m
- usageSampling.m
Toolboxes/gpml/inf
- infEP
- infExact
- infFITC
- infFITC_EP
- infFITC_Laplace
- infGrid
- infKL
- infLaplace
- infLOO
- infMCMC
- infPrior
- infVB
Toolboxes/gpml/lik
- likBeta
- likErf
- likExp
- likGamma
- likGauss
- likGaussWarp
- likGumbel
- likInvGauss
- likLaplace
- likLogistic
- likMix
- likPoisson
- likSech2
- likT
- likUni
- likWeibull
Toolboxes/gpml/mean
- meanConst
- meanDiscrete
- meanGP
- meanGPexact
- meanLinear
- meanMask
- meanNN
- meanOne
- meanPoly
- meanPow
- meanPref
- meanProd
- meanScale
- meanSum
- meanZero
Toolboxes/gpml/prior
- priorClamped
- priorClampedMulti
- priorDelta
- priorDeltaMulti
- priorGamma
- priorGauss
- priorGaussMulti
- priorInvGauss
- priorLaplace
- priorLaplaceMulti
- priorLogNormal
- priorMix
- priorSmoothBox1
- priorSmoothBox2
- priorT
- priorTMulti
- priorTransform
- priorWeibull
Toolboxes/gpml/util
- binaryEPGP
- binaryGP
- binaryLaplaceGP
- brentmin.m
- cov_deriv_sq_dist
- elsympol
- gauher
- glm_invlink_exp
- glm_invlink_expexp
- glm_invlink_logistic
- glm_invlink_logit
- gpr
- lbfgsb.m
- lik_epquad
- logphi
- logsumexp2
- make.m
- minimize
- minimize
- minimize_lbfgsb
- minimize_lbfgsb_gradfun
- minimize_lbfgsb_objfun
- minimize_old
- rewrap
- solve_chol
- sq_dist
- unwrap
Toolboxes/nsamdf
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