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Jeremy Huard


MathWorks

24 total contributions since 2014

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Answered
How to simulate simbiology model using array of doses?
In your code, dose_sc and dose_iv contain both all doses in your model. You should specify the name of a SC or IV dose that is ...

11 jours ago | 1

| accepted

Answered
Performing infusion experiment in Simbiology desktop
Hi Rajeev, whether you choose a repeated dose or a scheduled dose has rather to do with the schedule of your drug regimen. Both...

19 jours ago | 1

| accepted

Answered
How to create custom error model in Simbiology
Hi Praveen, the error model you suggested looks like a combined error model. But from your equation I don't see whether you exp...

21 jours ago | 0

| accepted

Answered
75 errors arise from simulation of Biomodels model.
The error message is pretty clear though. It says that some variables used in reaction rates are not defined. Actually the troub...

24 jours ago | 1

Answered
Simulation makes no sense
By the way, I think had changed the glucose injection to 0.3 instead of 0.003 mainly to make easier to spot the event. But if y...

24 jours ago | 0

Answered
Simulation makes no sense
Hi Juan Carlos, as Pax suggested in his answer to your previous question, this model does not contain units, so you can't make ...

24 jours ago | 1

Answered
SimBiology getConfigSet does not recognise model object
Hi Alvaro, sbioloadproject will return a struct that contains your model(s). This should work: s = sbioloadproject('RandomNet...

24 jours ago | 1

Answered
How to upload KEGG file to Simbiology so I can start analyzing.
Hi Juan Carlos, KEGG files can't be imprted into SimBiology as is. You will need to convert them into SBML files first. There ...

26 jours ago | 0

| accepted

Answered
In Simbiology, should the categorical variables be assigned as group variable or covariate in the dataset?
Group variable defines an index for a subject/experiment. In your dataset, ID is a group variable. Gender and age can be both co...

environ un mois ago | 0

Solved


Make the vector [1 2 3 4 5 6 7 8 9 10]
In MATLAB, you create a vector by enclosing the elements in square brackets like so: x = [1 2 3 4] Commas are optional, s...

2 mois ago

Answered
Question on specifying input to sbiosimulate
Hi Deepa, there might be different reasons to get this error message. A typical one is when one of the fluxes becomes Inf or Na...

3 mois ago | 0

Answered
Finding non-constant species in Simbiology Object
What you get is not a function handle but an heterogenous array of SimBiology objects. This array contains a mix of different co...

3 mois ago | 1

| accepted

Answered
Question on specifying input to sbiosimulate
There is multiple ways to do this: 1- if you want to run multiple simulations, I recommend to use a SimFunction that will take ...

3 mois ago | 1

Answered
Output of sbiosteadystate task
See answer here.

3 mois ago | 1

| accepted

Answered
Accessing a variant object
Hi Deepa, you can access the variant content with the dot notation. If your variant is called v, v.Content will be an array of...

3 mois ago | 0

| accepted

Answered
How to set up estimation method in sbiofit
Hi Deepa, let me summarize my understanding of your problem and please correct me if I'm wrong: you only have steady state dat...

3 mois ago | 0

Answered
How to run the model in SBML file?
Dear Deepa, there is two ways to simulate a model saved in a sbml file: 1. using the SimBiology App You can open the SimB...

3 mois ago | 0

| accepted

Submitted


sbioimportBerkeleyMadonna
Imports ODE models in the BerkeleyMadonna(TM) format into a SimBiology(R) model

4 mois ago | 2 downloads |

Answered
Plot StateData at a certain time point in Simbiology
Dear Göran, indeed, you can achieve this by modifying the piece of code contained in the scan plot. Let's say that you want to...

5 mois ago | 0

Submitted


Import SBML file with function definitions into SimBiology
Functions to import SBML files containing function definitions into SimBiology.

presque 3 ans ago | 1 download |

Solved


Times 2 - START HERE
Try out this test problem first. Given the variable x as your input, multiply it by two and put the result in y. Examples:...

plus de 3 ans ago

Solved


Triangle Numbers
Triangle numbers are the sums of successive integers. So 6 is a triangle number because 6 = 1 + 2 + 3 which can be displa...

plus de 3 ans ago

Solved


Find the sum of all the numbers of the input vector
Find the sum of all the numbers of the input vector x. Examples: Input x = [1 2 3 5] Output y is 11 Input x ...

plus de 3 ans ago

Solved


Text processing - Help Johnny write a letter home from camp
Johnny overuses the word 'great'. Write a script that will help him with this and future letters. If a sentence contains more ...

presque 5 ans ago