STXM data analysis script collection - STACKLab
Updated 13 Jul 2009
This is a MATLAB script collection developed at Lawrence Berkeley National Lab that can be used as a basis for Scanning Transmission X-ray Microscopy (STXM) data analysis.
It includes routines for the following basic tasks:
- raw stack data import
- image alignment
- automated conversion to optical density (OD)
- stack movie playback
- quantitative component mapping using Singular Value Decomposition (SVD) techniques
This package also contains the GUI stack exploration tool STACKLab. It allows the extraction of average spectra from arbitrary regions of interest (ROI) and the creation of 2 image difference-maps. All results can be exported as figures or text files for further use.
Tobias Henn (2023). STXM data analysis script collection - STACKLab (https://www.mathworks.com/matlabcentral/fileexchange/24006-stxm-data-analysis-script-collection-stacklab), MATLAB Central File Exchange. Retrieved .
MATLAB Release Compatibility
Platform CompatibilityWindows macOS Linux
- Sciences > Biological and Health Sciences > Biomedical Imaging >
- Image Processing and Computer Vision > Computer Vision Toolbox > Point Cloud Processing > Display Point Clouds >
Inspired by: Efficient subpixel image registration by cross-correlation
Inspired: STXM ParticleAnalysis2 GUI, STXM Spectromicroscopy Particle Analysis Routines
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