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WITio
278 Downloads
Updated 17 Feb 2022
Version History
2.0.1 | DOI to peer-reviewed SoftwareX publication. See v2.0.1 changelog in GitLab. |
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2.0.0 | Foretaste into BREAKING MAJOR RELEASE before its yet-to-be-published peer-reviewed SoftwareX publication. See v2.0.0 changelog in GitLab. |
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1.4.0.1 | Hotfix to file writing corruption. |
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1.4.0 | See v1.4.0 changelog in GitLab. |
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1.3.2.1 | See v1.3.2.1 changelog in GitLab. |
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1.3.2 | See v1.3.2 changelog in GitLab. |
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1.3.1 | See v1.3.1 changelog in GitLab. |
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1.3.0 | See v1.3.0 changelog in GitLab. |
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1.2.3 | See v1.2.3 changelog in GitLab. |
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1.2.2 | Hotfix reported error on local disks. (Code was unintentionally only tuned to network disks.) |
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1.2.1 | Hotfix to properly add paths upon toolbox installation by wit_io.mltbx. |
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1.2.0.1 | Fix link to changelog. |
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1.2.0 | See v1.2.0 changelog in GitLab. |
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1.1.2.1 | Reupload to enable the toolbox installer. |
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1.1.2 | Toolbox installer. Example 5: Unpatterning the Video Stitching image. Bug fixes. Code clean-up. |
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1.1.1 | Polishing. Many bug fixes. More and simpler examples. |
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1.0.2 | Added short usage guide in description. |
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1.0.1 | Updated README.txt. Polished description. Added thumbnail. |
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1.0 |
License
Cite As
Holmi, Joonas Tapani, and Harri Lipsanen. “WITio: A MATLAB Data Evaluation Toolbox to Script Broader Insights into Big Data from WITec Microscopes.” SoftwareX, vol. 18, Elsevier BV, June 2022, p. 101009, doi:10.1016/j.softx.2022.101009.
Select Citation Style
MLA |
Holmi, Joonas Tapani, and Harri Lipsanen. “WITio: A MATLAB Data Evaluation Toolbox to Script Broader Insights into Big Data from WITec Microscopes.” SoftwareX, vol. 18, Elsevier BV, June 2022, p. 101009, doi:10.1016/j.softx.2022.101009.
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APA |
Holmi, J. T., & Lipsanen, H. (2022). WITio: A MATLAB data evaluation toolbox to script broader insights into big data from WITec microscopes. SoftwareX, 18, 101009. Elsevier BV. Retrieved from https://doi.org/10.1016%2Fj.softx.2022.101009
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BibTeX |
@article{Holmi_2022,
doi = {10.1016/j.softx.2022.101009},
url = {https://doi.org/10.1016%2Fj.softx.2022.101009},
year = 2022,
month = {jun},
publisher = {Elsevier {BV}},
volume = {18},
pages = {101009},
author = {Joonas Tapani Holmi and Harri Lipsanen},
title = {{WITio}: A {MATLAB} data evaluation toolbox to script broader insights into big data from {WITec} microscopes},
journal = {{SoftwareX}}
}
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Requires
MATLAB Release Compatibility
Platform Compatibility
Windows macOS LinuxCategories
Acknowledgements
Inspired by: export_fig, The Voigt/complex error function (second version), Label connected components in 2-D array, 3D Euclidean Distance Transform for Variable Data Aspect Ratio
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+WITio
+WITio/+batch
- normalize_local_max.m
- regexp_rename.m
- remove_cosmic_rays_and_average.m
- remove_dark_current.m
- zero_rayleigh_peak.m
+WITio/+demo
- A1_import_file_to_get_started.m
- A2_force_units.m
- A3_plot_data.m
- A4_permanent_user_preferences.m
- A5_compress_and_decompress_files.m
- B1_filter_data_for_lineshape_parameters.m
- B2_mask_data_and_average.m
- B3_crop_data.m
- B4_plot_data_position_and_scalebar.m
- C_graphene_data_analysis.m
- D_stitch_spectra.m
- E_unpattern_video_stitching.m
- F_scanline_error_correction.m
- Z_customize_data_and_export.m
+WITio/+dev
+WITio/+dev/+gitlab
+WITio/+dev/+tests
+WITio/+dev/+tools
- get_dir_files_recursively.m
- get_unique_wid_Types.m
- get_unique_wit_Names.m
- get_unique_wit_Types.m
- get_Versions.m
- list_wit_differences.m
- list_wit_w_nonzero_versions.m
+WITio/+fun
- anyfun.m
- anyfun2cell.m
- clever_statistics_and_outliers.m
- dim_size_consistent_repmat.m
- generic_sub2ind.m
- href_dir.m
- varargin_dashed_str.m
+WITio/+fun/+file
+WITio/+fun/+fit
- bw2lines.m
- fit_data.m
- fit_lineshape_arbitrary.m
- fit_lineshape_automatic_guess.m
- fit_lineshape_gaussian.m
- fit_lineshape_lorentzian.m
- fit_lineshape_voigtian.m
- fit_polynomial.m
- fun_lineshape_gaussian.m
- fun_lineshape_lorentzian.m
- fun_lineshape_voigtian.m
- fun_max_Jacobian_sparsity_pattern.m
- generate_Jacobian_and_Hessian_funs.m
- jacobian_and_hessian_to_1D_and_2D.m
- jacobian_helper.m
- mask_bad_results_and_noise.m
+WITio/+fun/+image
- apply_CMDLCA.m
- apply_CMRLCM.m
- apply_MDLCA.m
- apply_MRLCM.m
- data_mask.m
- data_true_and_nan_collective_hole_reduction.m
- rolling_window_analysis.m
- rolling_window_analysis_transformation.m
+WITio/+fun/+indep
- get_unique_names.m
- get_valid_and_unique_names.m
- get_valid_names.m
- myinpolygon.m
- mynanmaxfilt2.m
- mynanmean.m
- mynanmedian.m
- mynanstdfilt2.m
- mynansum.m
- myquantile.m
- myregionprops.m
- mystrjoin.m
- vector_quantile.m
+WITio/+fun/+java
- java_array.m
- java_class_cast.m
- java_class_constructor.m
- java_class_constructor_call.m
- java_class_field.m
- java_class_fields.m
- java_class_field_call.m
- java_class_method.m
- java_class_methods.m
- java_class_method_call.m
- java_class_path_add_after_static.m
- java_class_path_add_before_static.m
- java_class_path_get.m
- java_class_path_rm.m
- java_class_signatures.m
- java_class_signature_test.m
- java_class_superclasses.m
- java_major_version.m
- java_objects_from_varargin.m
- java_objects_to_varargout.m
+WITio/+fun/+misc
+WITio/+fun/+varargin_dashed_str
+WITio/+fun/+visual
+WITio/+obj/@debug
+WITio/+obj/@handle_listener
+WITio/+obj/@handle_listener_event_data
+WITio/+obj/@wid
- copy.m
- copy_LinksToOthers.m
- copy_Others_if_shared_and_unshare.m
- crop.m
- crop_Graph.m
- crop_Graph_with_bg_helper.m
- DataTree_format_TData.m
- DataTree_format_TDInterpretation.m
- DataTree_format_TDLinearTransformation.m
- DataTree_format_TDLUTTransformation.m
- DataTree_format_TDSpaceInterpretation.m
- DataTree_format_TDSpaceTransformation.m
- DataTree_format_TDSpectralInterpretation.m
- DataTree_format_TDSpectralTransformation.m
- DataTree_format_TDTimeInterpretation.m
- DataTree_format_TDTransformation.m
- DataTree_format_TDZInterpretation.m
- DataTree_get.m
- DataTree_set.m
- destroy_LinksToOthers.m
- filter_bg.m
- filter_center_of_mass.m
- filter_fun.m
- filter_gaussian.m
- filter_lorentzian.m
- filter_max.m
- filter_min.m
- filter_sum.m
- filter_voigtian.m
- find_linked_wits_to_this_wid.m
- find_owner_id_to_this_wit.m
- get_HtmlName.m
- histogram.m
- image_mask.m
- image_mask_editor.m
- interpret_Graph.m
- interpret_X.m
- interpret_Y.m
- interpret_Z.m
- manager.m
- merge_Data.m
- merge_Info_Graph.m
- new.m
- new_Bitmap.m
- new_Graph.m
- new_Image.m
- new_Interpretation_Space.m
- new_Interpretation_Spectral.m
- new_Interpretation_Time.m
- new_Interpretation_Z.m
- new_Text.m
- new_Transformation_Linear.m
- new_Transformation_LUT.m
- new_Transformation_Space.m
- new_Transformation_Spectral.m
- plot.m
- plot_position.m
- plot_position_Image_helper.m
- plot_position_Line_helper.m
- plot_position_Point_helper.m
- plot_scalebar.m
- plot_scalebar_helper.m
- read.m
- spatial_average.m
- spectral_stitch.m
- spectral_stitch_helper.m
- unpattern_video_stitching.m
- unpattern_video_stitching_helper.m
- wid.m
- wid_DataTree_get.m
- wid_DataTree_set.m
- wid_Data_format_TData.m
- wid_Data_format_TDInterpretation.m
- wid_Data_format_TDLinearTransformation.m
- wid_Data_format_TDLUTTransformation.m
- wid_Data_format_TDSpaceInterpretation.m
- wid_Data_format_TDSpaceTransformation.m
- wid_Data_format_TDSpectralInterpretation.m
- wid_Data_format_TDSpectralTransformation.m
- wid_Data_format_TDTimeInterpretation.m
- wid_Data_format_TDTransformation.m
- wid_Data_format_TDZInterpretation.m
- wid_Data_get.m
- wid_Data_get_Bitmap.m
- wid_Data_get_DataType.m
- wid_Data_get_Graph.m
- wid_Data_get_Image.m
- wid_Data_get_LineValid.m
- wid_Data_get_Text.m
- wid_Data_set.m
- wid_Data_set_Bitmap.m
- wid_Data_set_DataType.m
- wid_Data_set_Graph.m
- wid_Data_set_Image.m
- wid_Data_set_Text.m
- wid_Info_get.m
- wid_SubType_get.m
- wid_SubType_set.m
- write.m
+WITio/+obj/@wip
- add_Data.m
- append.m
- destroy_all_Viewers.m
- destroy_Data.m
- destroy_duplicate_Transformations.m
- destroy_Viewers.m
- find_Data.m
- get_Data_DataClassName_pairs.m
- get_Root_Version.m
- get_Viewer_ViewerClassName_pairs.m
- interpret.m
- interpret_forced.m
- interpret_StandardUnit.m
- manager.m
- new.m
- new_TData.m
- read.m
- read_Version.m
- set_Root_Version.m
- transform.m
- transform_forced.m
- update.m
- wip.m
- wip_update_Data.m
- wip_update_Tree.m
- write.m
+WITio/+obj/@wit
- binary_ind2obj.m
- bread.m
- bread_Data.m
- bwrite.m
- char.m
- copy.m
- DataTree_get.m
- DataTree_set.m
- disp.m
- disp_cmp.m
- fread.m
- fread_Data.m
- fwrite.m
- hash.m
- match_by_Data_criteria.m
- progress_bar.m
- read.m
- regexp.m
- regexp_all_Names.m
- regexp_ancestors.m
- regexp_children.m
- reload.m
- search.m
- search_ancestors.m
- search_children.m
- sort_by_Name_Data.m
- swap_endianess.m
- unique_by_Name_Data.m
- update.m
- wit.m
- write.m
- xxh3_64.m
+WITio/+tbx
- backward_compatible.m
- cd.m
- delete_waitbars.m
- edit.m
- ifnodesktop.m
- license.m
- msgbox.m
- path.m
- rmpath_addpath.m
- uiwait.m
- verbose.m
- waitbar.m
- wip_wid_context_menus.m
- wip_wid_context_menus_cmd.m
+WITio/+tbx/+path
+WITio/+tbx/+pref
+WITio/+tbx/+ui
- sidebar.m
- sidebar_button.m
- sidebar_checkbox.m
- sidebar_clim.m
- sidebar_colormap_mpl.m
- sidebar_cursor.m
- sidebar_delete.m
- sidebar_export.m
- sidebar_index_slider.m
- sidebar_perceptually_uniform_colormaps.m
- sidebar_popup.m
- sidebar_sum_filter.m
third party
third party/bwdistsc2d
third party/export_fig
- append_pdfs
- copyfig
- crop_borders
- eps2pdf
- export_fig
- fix_lines.m
- ghostscript
- hyperlink
- im2gif.m
- isolate_axes
- pdf2eps.m
- pdftops
- print2array
- print2eps
- read_write_entire_textfile.m
- user_string
- using_hg2.m
third party/fadf
third party/label
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