MP3 a medical imaging toolbox (MRI, CT, PET...)

Medical software for Processing multi-Parametric images Pipelines

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Updated 14 Feb 2022

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Medical software for Processing multi-Parametric images Pipelines

More information available in our publication (https://www.frontiersin.org/articles/10.3389/fninf.2020.594799/full):
MP3: Medical software for Processing multi-Parametric images Pipelines.
Brossard el al.; Frontiers in Neuroinformatics, 2020, 14, 53.

Presentation and tutorials are available here !
https://www.youtube.com/playlist?list=PL-Tj6Wc9aE9x7i6s-RLetvNE0isnEsFm7

MP³ is an open source software aimed to support preclinical and clinical researchers for image processing studies. This Matlab toolbox offers a graphical interface that helps to process medical images. Here are the most important tools included in MP³ :

Import medical images (e.g. DICOM, NIFTI, Bruker, …) and convert them to nifti/json format
Visualize images (2D to 5D data)
Process (e.g. registration, model fit, filters, …)
Analyze (e.g. ROIs, scatterplots, …) medical images.
Standard processes from SPM or FSL can be called as well as custom fonctions. Complex postprocessing pipelines can be created and applied to mutiparametric (e.g. MRI T1w + MRI T2w,…), multidimensional (e.g. spatial +temporal+echoes,…) or multimodal (e.g. MRI +CT, …) data. Once defined in a single patient, these processes can be stored and applied to a larger database using parallel architectures. MP³ was initially created in the Grenoble Institute of Neurosciences (France) to process multiparametric MRI protocols (anatomy+relaxometry+perfusion) in cohorts of +500 animals.

SUMMARY Poster (ENGLISH) (FRENCH): poster presented at the 4th Congress of the SFRMBM (Strasbourg).

Requirements
In order to fully enjoy MP³, you have to meet the following requirements:

Matlab 2017b or higher
Toolboxes (Mandatory : Image Processing Toolbox -- Recommended : Statistics and Machine Learning Toolbox ; Parallel Computing Toolbox)
Java 8 or higher
Data to process in Bruker / DICOM / Philips / Nifti format

This project is developed in the Grenoble Institut of Neurosciences by the team Neuroimaging and brain perfusion
The main contributors of this project are : Clément Brossard and Benjamin Lemasson

keys words : animal, ants, asl, brain extraction, bruker, cbv, clinical, clustering, compute tomography, conversion, ct, database, dicom, fit, fsl, human, image analysis, image processing, image registration, mask, mouse, mri, multiparametric, parrec, perfusion, pipeline, preclinical, radiomic, radiomics, rat, so2, spm, t1, T2, T2*, vsi

Cite As

benjamin lemasson (2023). MP3 a medical imaging toolbox (MRI, CT, PET...) (https://github.com/nifm-gin/MP3/releases/tag/v1.4), GitHub. Retrieved .

Brossard, C., Montigon, O., Boux, F., Delphin, A., Christen, T., Barbier, E. L., & Lemasson, B. (2020). MP3: Medical software for Processing multi-Parametric images Pipelines. Frontiers in Neuroinformatics, 14, 53.

MATLAB Release Compatibility
Created with R2017b
Compatible with R2017b and later releases
Platform Compatibility
Windows macOS Linux

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Version Published Release Notes
1.4

See release notes for this release on GitHub: https://github.com/nifm-gin/MP3/releases/tag/v1.4

1.3

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.